Information for 6-TTCCAATGTCAAC (Motif 7)

A C G T C G A T A G T C A G T C C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A G T A C
Reverse Opposite:
A C T G A C G T A C G T A C T G G T C A A G T C C G T A A G C T A C G T A C T G A C T G C G T A C G T A
p-value:1e-13
log p-value:-3.062e+01
Information Content per bp:1.880
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.2 +/- 24.1bp
Average Position of motif in Background58.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTCCAATGTCAAC-
TTGCCATGGCAACC
 A C G T C G A T A G T C A G T C C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A G T A C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTCCAATGTCAAC-
TTGCCATGGCAACN
 A C G T C G A T A G T C A G T C C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A G T A C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTCCAATGTCAAC---
TGCCAAAATAAACANN
 A C G T C G A T A G T C A G T C C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A G T A C A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

RFX5/MA0510.2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTCCAATGTCAAC-
NGTTGCCATGGCAACG
 A C G T A C G T A C G T C G A T A G T C A G T C C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A G T A C A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TTCCAATGTCAAC
-BTCAAGGTCA--
 A C G T C G A T A G T C A G T C C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A G T A C
A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

RFX2/MA0600.2/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TTCCAATGTCAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T C G A T A G T C A G T C C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A G T A C A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTCCAATGTCAAC
KGTTGCCATGGCAAC
 A C G T A C G T A C G T C G A T A G T C A G T C C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A G T A C
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TTCCAATGTCAAC
GTTGCCATGGCAAC
 A C G T A C G T C G A T A G T C A G T C C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A G T A C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Foxa2/MA0047.2/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTCCAATGTCAAC-
--NCTAAGTAAACA
 A C G T C G A T A G T C A G T C C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A G T A C A C G T
A C G T A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TTCCAATGTCAAC
-NTCAAGGTCA--
 A C G T C G A T A G T C A G T C C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A G T A C
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T