Information for 6-AAAGCAMACW (Motif 7)

C G T A T C G A C G T A A T C G A T G C G T C A T G C A C G T A T G A C G C T A
Reverse Opposite:
C G A T A C T G G C A T A C G T A C G T T A C G A T G C G C A T A G C T G C A T
p-value:1e-12
log p-value:-2.851e+01
Information Content per bp:1.633
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif10.27%
Number of Background Sequences with motif1827.2
Percentage of Background Sequences with motif3.92%
Average Position of motif in Targets48.4 +/- 27.1bp
Average Position of motif in Background48.7 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AAAGCAMACW
AAAGTAAACA
 C G T A T C G A C G T A A T C G A T G C G T C A T G C A C G T A T G A C G C T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AAAGCAMACW
AAAGTAAACA
 C G T A T C G A C G T A A T C G A T G C G T C A T G C A C G T A T G A C G C T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-AAAGCAMACW----
CAAAGTAAACANNNN
 A C G T C G T A T C G A C G T A A T C G A T G C G T C A T G C A C G T A T G A C G C T A A C G T A C G T A C G T A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AAAGCAMACW
WAAGTAAAYA
 C G T A T C G A C G T A A T C G A T G C G T C A T G C A C G T A T G A C G C T A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----AAAGCAMACW--
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A C G T C G T A T C G A C G T A A T C G A T G C G T C A T G C A C G T A T G A C G C T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

Foxa2/MA0047.2/Jaspar

Match Rank:6
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--AAAGCAMACW
NCTAAGTAAACA
 A C G T A C G T C G T A T C G A C G T A A T C G A T G C G T C A T G C A C G T A T G A C G C T A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AAAGCAMACW--
TATGTAAACANG
 C G T A T C G A C G T A A T C G A T G C G T C A T G C A C G T A T G A C G C T A A C G T A C G T
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

FOXP1/MA0481.1/Jaspar

Match Rank:8
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AAAGCAMACW---
CAAAAGTAAACAAAG
 A C G T A C G T C G T A T C G A C G T A A T C G A T G C G T C A T G C A C G T A T G A C G C T A A C G T A C G T A C G T
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G

FOXC2/MA0846.1/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AAAGCAMACW--
TAAGTAAACAAA
 C G T A T C G A C G T A A T C G A T G C G T C A T G C A C G T A T G A C G C T A A C G T A C G T
G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

FOXP2/MA0593.1/Jaspar

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AAAGCAMACW--
-AAGTAAACAAA
 C G T A T C G A C G T A A T C G A T G C G T C A T G C A C G T A T G A C G C T A A C G T A C G T
A C G T C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A