Information for 5-GAGCAGCCTGCCC (Motif 5)

T A C G C G T A T A C G A G T C G T C A T C A G A G T C G T A C G A C T A C T G A G T C T G A C A G T C
Reverse Opposite:
C T A G A C T G C T A G A G T C C G T A A C T G T C A G A G T C C A G T C T A G A T G C C G A T A T G C
p-value:1e-18
log p-value:-4.177e+01
Information Content per bp:1.744
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif4.05%
Number of Background Sequences with motif192.4
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets44.1 +/- 21.3bp
Average Position of motif in Background52.7 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.61
Offset:7
Orientation:forward strand
Alignment:GAGCAGCCTGCCC---
-------CTGCCCGCA
 T A C G C G T A T A C G A G T C G T C A T C A G A G T C G T A C G A C T A C T G A G T C T G A C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAGCAGCCTGCCC-
NAGAACAGNCTGTNCT
 A C G T A C G T T A C G C G T A T A C G A G T C G T C A T C A G A G T C G T A C G A C T A C T G A G T C T G A C A G T C A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAGCAGCCTGCCC-
AGGNCANNGTGACCT
 A C G T T A C G C G T A T A C G A G T C G T C A T C A G A G T C G T A C G A C T A C T G A G T C T G A C A G T C A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGCCTGCCC
NAGGTCACNNTGACC
 A C G T A C G T T A C G C G T A T A C G A G T C G T C A T C A G A G T C G T A C G A C T A C T G A G T C T G A C A G T C
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.58
Offset:7
Orientation:forward strand
Alignment:GAGCAGCCTGCCC---
-------ATGCCCACC
 T A C G C G T A T A C G A G T C G T C A T C A G A G T C G T A C G A C T A C T G A G T C T G A C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGCCTGCCC
VAGRACAKNCTGTBC
 A C G T A C G T T A C G C G T A T A C G A G T C G T C A T C A G A G T C G T A C G A C T A C T G A G T C T G A C A G T C
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGCCTGCCC
VAGRACAKWCTGTYC
 A C G T A C G T T A C G C G T A T A C G A G T C G T C A T C A G A G T C G T A C G A C T A C T G A G T C T G A C A G T C
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGCCTGCCC-
NAGNACANNNTGTNCT
 A C G T A C G T T A C G C G T A T A C G A G T C G T C A T C A G A G T C G T A C G A C T A C T G A G T C T G A C A G T C A C G T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

PB0202.1_Zfp410_2/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GAGCAGCCTGCCC------
--TCACCCCGCCCCAAATT
 T A C G C G T A T A C G A G T C G T C A T C A G A G T C G T A C G A C T A C T G A G T C T G A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G A T C G T C A A G T C G A T C A G T C A G T C A C T G T G A C A G T C T G A C A T G C C G A T G C T A G T C A G A C T G C A T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAGCAGCCTGCCC-
TGGCAGNCTGCCAG
 T A C G C G T A T A C G A G T C G T C A T C A G A G T C G T A C G A C T A C T G A G T C T G A C A G T C A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G