Information for 5-CCAGGTCACA (Motif 3)

A T G C A G T C C G T A A T C G C T A G C A G T G T A C C G T A A G T C G T C A
Reverse Opposite:
C A G T A C T G A C G T A C T G G T C A A G T C A T G C C G A T A C T G A T C G
p-value:1e-21
log p-value:-4.976e+01
Information Content per bp:1.808
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif5.64%
Number of Background Sequences with motif335.0
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets48.7 +/- 22.7bp
Average Position of motif in Background50.7 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CCAGGTCACA
-AAGGTCAC-
 A T G C A G T C C G T A A T C G C T A G C A G T G T A C C G T A A G T C G T C A
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

CREB3/MA0638.1/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CCAGGTCACA-
GTGCCACGTCATCA
 A C G T A C G T A C G T A T G C A G T C C G T A A T C G C T A G C A G T G T A C C G T A A G T C G T C A A C G T
T C A G A G C T C A T G G T A C A T G C C G T A A G T C C T A G G A C T T G A C C T G A A G C T G T A C T C G A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGTCACA
TCAAGGTCAN-
 A C G T A T G C A G T C C G T A A T C G C T A G C A G T G T A C C G T A A G T C G T C A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CCAGGTCACA
--AGGTCA--
 A T G C A G T C C G T A A T C G C T A G C A G T G T A C C G T A A G T C G T C A
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCAGGTCACA
ATCAAGGTCA--
 A C G T A C G T A T G C A G T C C G T A A T C G C T A G C A G T G T A C C G T A A G T C G T C A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CCAGGTCACA-
ATGCCACGTCATCA
 A C G T A C G T A C G T A T G C A G T C C G T A A T C G C T A G C A G T G T A C C G T A A G T C G T C A A C G T
T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCAGGTCACA
TRAGGTCA--
 A T G C A G T C C G T A A T C G C T A G C A G T G T A C C G T A A G T C G T C A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

USF1/MA0093.2/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCAGGTCACA
GCCACGTGACC
 A C G T A T G C A G T C C G T A A T C G C T A G C A G T G T A C C G T A A G T C G T C A
T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C

XBP1/MA0844.1/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CCAGGTCACA
AATGCCACGTCATC
 A C G T A C G T A C G T A C G T A T G C A G T C C G T A A T C G C T A G C A G T G T A C C G T A A G T C G T C A
C G T A C T G A A C G T C A T G G T A C A G T C C T G A G A T C C T A G A G C T T G A C C T G A A C G T A G T C

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCAGGTCACA--
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C G T A T G C A G T C C G T A A T C G C T A G C A G T G T A C C G T A A G T C G T C A A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A