Information for 3-CGACCTGACC (Motif 2)

A G T C C T A G T G C A A T G C T G A C A G C T T A C G G T C A G A T C G A T C
Reverse Opposite:
C T A G C T A G C A G T A T G C T C G A A C T G T A C G A C G T A G T C T C A G
p-value:1e-73
log p-value:-1.695e+02
Information Content per bp:1.683
Number of Target Sequences with motif168.0
Percentage of Target Sequences with motif24.31%
Number of Background Sequences with motif2031.8
Percentage of Background Sequences with motif4.36%
Average Position of motif in Targets55.9 +/- 23.6bp
Average Position of motif in Background50.0 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:CGACCTGACC-
-----TGACCT
 A G T C C T A G T G C A A T G C T G A C A G C T T A C G G T C A G A T C G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CGACCTGACC---
-----TGACCYCT
 A G T C C T A G T G C A A T G C T G A C A G C T T A C G G T C A G A T C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGACCTGACC
TGACCTYA--
 A G T C C T A G T G C A A T G C T G A C A G C T T A C G G T C A G A T C G A T C
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGACCTGACC-------
-NNCNTGACCCCGCTCT
 A G T C C T A G T G C A A T G C T G A C A G C T T A C G G T C A G A T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGACCTGACC-------
TGTCGTGACCCCTTAAT
 A G T C C T A G T G C A A T G C T G A C A G C T T A C G G T C A G A T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CGACCTGACC-----
-----TGACCTTGAT
 A G T C C T A G T G C A A T G C T G A C A G C T T A C G G T C A G A T C G A T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGACCTGACC-------
-NNNNTGACCCGGCGCG
 A G T C C T A G T G C A A T G C T G A C A G C T T A C G G T C A G A T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

Pax2/MA0067.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CGACCTGACC
--NCGTGACN
 A G T C C T A G T G C A A T G C T G A C A G C T T A C G G T C A G A T C G A T C
A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CGACCTGACC-
AGGNCANNGTGACCT
 A C G T A C G T A C G T A C G T A G T C C T A G T G C A A T G C T G A C A G C T T A C G G T C A G A T C G A T C A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

USF1/MA0093.2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGACCTGACC
GCCACGTGACC
 A C G T A G T C C T A G T G C A A T G C T G A C A G C T T A C G G T C A G A T C G A T C
T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C