Information for 5-GCGTCACGCT (Motif 3)

C T A G T A G C A T C G C G A T T A G C C G T A T A G C C T A G A T G C G A C T
Reverse Opposite:
C T G A A T C G A G T C A C T G G A C T A T C G C G T A T A G C A T C G A G T C
p-value:1e-20
log p-value:-4.826e+01
Information Content per bp:1.719
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif6.59%
Number of Background Sequences with motif533.4
Percentage of Background Sequences with motif1.14%
Average Position of motif in Targets51.8 +/- 25.1bp
Average Position of motif in Background53.5 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX1/MA0779.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GCGTCACGCT--------
-CGTCACGCATGACTGCA
 C T A G T A G C A T C G C G A T T A G C C G T A T A G C C T A G A T G C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GCGTCACGCT------
--GTCACGCTCNCTGA
 C T A G T A G C A T C G C G A T T A G C C G T A T A G C C T A G A T G C G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCGTCACGCT
-AGTCACGC-
 C T A G T A G C A T C G C G A T T A G C C G T A T A G C C T A G A T G C G A C T
A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T

PAX9/MA0781.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCGTCACGCT--------
-CGTCACGCATGACTGCA
 C T A G T A G C A T C G C G A T T A G C C G T A T A G C C T A G A T G C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GCGTCACGCT
----CACGCA
 C T A G T A G C A T C G C G A T T A G C C G T A T A G C C T A G A T G C G A C T
A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

PB0147.1_Max_2/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCGTCACGCT----
GTGCCACGCGACTG
 C T A G T A G C A T C G C G A T T A G C C G T A T A G C C T A G A T G C G A C T A C G T A C G T A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCGTCACGCT-
-TBGCACGCAA
 C T A G T A G C A T C G C G A T T A G C C G T A T A G C C T A G A T G C G A C T A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:8
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------GCGTCACGCT
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C A T C G C G A T T A G C C G T A T A G C C T A G A T G C G A C T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PB0180.1_Sp4_2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCGTCACGCT----
NNGGCCACGCCTTTN
 A C G T C T A G T A G C A T C G C G A T T A G C C G T A T A G C C T A G A T G C G A C T A C G T A C G T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Atf1/MA0604.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCGTCACGCT
TACGTCAT---
 A C G T C T A G T A G C A T C G C G A T T A G C C G T A T A G C C T A G A T G C G A C T
A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T A C G T A C G T A C G T