Information for 9-CTGGCACTAG (Motif 27)

A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T G T C A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C T G A C G T A C T G G T A C A G T C C G T A A C T G
p-value:1e-6
log p-value:-1.514e+01
Information Content per bp:1.940
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets33.8 +/- 19.6bp
Average Position of motif in Background45.8 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CTGGCACTAG
VGCTGWCAVB--
 A C G T A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T G T C A A C T G
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCACTAG
TGTCTGDCACCT-
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T G T C A A C T G
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCACTAG
CTTGGCAA---
 A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T G T C A A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCACTAG
NTTGGCANN--
 A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T G T C A A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:5
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CTGGCACTAG
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T G T C A A C T G
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCACTAG
GGTTGGCAT---
 A C G T A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T G T C A A C T G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCACTAG
GCTGTCAA---
 A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T G T C A A C T G
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------CTGGCACTAG-
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T G T C A A C T G A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCACTAG
CCTGTCAA---
 A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T G T C A A C T G
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCACTAG
ARNTGACA----
 A C G T A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T G T C A A C T G
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T