Information for 2-CTGACWCAKGKCARGA (Motif 3)

G T A C A C G T A T C G T C G A A G T C G C A T A G T C G C T A C A T G A C T G A C G T A G T C G T C A C T A G A C T G G T C A
Reverse Opposite:
C A G T G T A C G A T C C A G T C T A G T G A C G T A C G T A C C G A T C T A G C G T A T C A G A G C T A T G C C G T A A C T G
p-value:1e-19
log p-value:-4.579e+01
Information Content per bp:1.664
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.18%
Number of Background Sequences with motif36.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets57.6 +/- 24.7bp
Average Position of motif in Background45.7 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX2/MA0783.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTGACWCAKGKCARGA
-TGACACCTGTCA---
 G T A C A C G T A T C G T C G A A G T C G C A T A G T C G C T A C A T G A C T G A C G T A G T C G T C A C T A G A C T G G T C A
A C G T G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A A C G T A C G T A C G T

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTGACWCAKGKCARGA
ATGACTCATC------
 G T A C A C G T A T C G T C G A A G T C G C A T A G T C G C T A C A T G A C T G A C G T A G T C G T C A C T A G A C T G G T C A
T C G A A C G T C A T G G C T A T A G C C G A T G T A C G C T A A C G T A T G C A C G T A C G T A C G T A C G T A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTGACWCAKGKCARGA
-TGACTCA--------
 G T A C A C G T A T C G T C G A A G T C G C A T A G T C G C T A C A T G A C T G A C G T A G T C G T C A C T A G A C T G G T C A
A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGACWCAKGKCARGA
-TGACACCTGTCA---
 G T A C A C G T A T C G T C G A A G T C G C A T A G T C G C T A C A T G A C T G A C G T A G T C G T C A C T A G A C T G G T C A
A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A A C G T A C G T A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGACWCAKGKCARGA
-TGACAGCTGTCA---
 G T A C A C G T A T C G T C G A A G T C G C A T A G T C G C T A C A T G A C T G A C G T A G T C G T C A C T A G A C T G G T C A
A C G T G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A A C G T A C G T A C G T

JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTGACWCAKGKCARGA
RATGASTCAT-------
 A C G T G T A C A C G T A T C G T C G A A G T C G C A T A G T C G C T A C A T G A C T G A C G T A G T C G T C A C T A G A C T G G T C A
C T A G T C G A G C A T C A T G G C T A T A G C C G A T G T A C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTGACWCAKGKCARGA
NNVTGASTCATN------
 A C G T A C G T G T A C A C G T A T C G T C G A A G T C G C A T A G T C G C T A C A T G A C T G A C G T A G T C G T C A C T A G A C T G G T C A
A T C G C T A G T G C A C G A T A C T G C T G A A T G C G C A T T G A C G C T A A G C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T

BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGACWCAKGKCARGA
DATGASTCAT-------
 A C G T G T A C A C G T A T C G T C G A A G T C G C A T A G T C G C T A C A T G A C T G A C G T A G T C G T C A C T A G A C T G G T C A
C A G T T G C A A C G T A C T G C G T A A T C G C G A T T G A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOS/MA0476.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGACWCAKGKCARGA
TGTGACTCATT------
 A C G T G T A C A C G T A T C G T C G A A G T C G C A T A G T C G C T A C A T G A C T G A C G T A G T C G T C A C T A G A C T G G T C A
C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTGACWCAKGKCARGA
TGCTGAGTCA--------
 A C G T A C G T G T A C A C G T A T C G T C G A A G T C G C A T A G T C G C T A C A T G A C T G A C G T A G T C G T C A C T A G A C T G G T C A
C G A T T A C G T G A C G A C T C A T G C G T A T A C G A C G T G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T