Information for 10-CTACGAGCCA (Motif 21)

A G T C A C G T T C G A T A G C A T C G C T G A A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C A G C T A T G C A C T G A G C T C G T A A C T G
p-value:1e-8
log p-value:-2.051e+01
Information Content per bp:1.874
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif36.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets58.9 +/- 25.1bp
Average Position of motif in Background43.5 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CTACGAGCCA--
---CGTGCCAAG
 A G T C A C G T T C G A T A G C A T C G C T G A A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CTACGAGCCA-
-----TGCCAA
 A G T C A C G T T C G A T A G C A T C G C T G A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CTACGAGCCA
----CAGCC-
 A G T C A C G T T C G A T A G C A T C G C T G A A C T G A G T C A G T C C G T A
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTACGAGCCA-
TGGCAGNCTGCCAG
 A C G T A C G T A C G T A G T C A C G T T C G A T A G C A T C G C T G A A C T G A G T C A G T C C G T A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTACGAGCCA----
--ACTAGCCAATCA
 A G T C A C G T T C G A T A G C A T C G C T G A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTACGAGCCA
-TACGTGCV-
 A G T C A C G T T C G A T A G C A T C G C T G A A C T G A G T C A G T C C G T A
A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CTACGAGCCA--
TTGGCANNNTGCCAAG
 A C G T A C G T A C G T A C G T A G T C A C G T T C G A T A G C A T C G C T G A A C T G A G T C A G T C C G T A A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CTACGAGCCA
TTGGCATGGTGCCA
 A C G T A C G T A C G T A C G T A G T C A C G T T C G A T A G C A T C G C T G A A C T G A G T C A G T C C G T A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

PB0113.1_E2F3_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTACGAGCCA-----
AGCTCGGCGCCAAAAGC
 A C G T A C G T A G T C A C G T T C G A T A G C A T C G C T G A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTACGAGCCA-
---BCAGACWA
 A G T C A C G T T C G A T A G C A T C G C T G A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A