Information for 11-RKCCMAGACAAMC (Motif 19)

C T G A A C T G A G T C A G T C G T C A C G T A C T A G G T C A A G T C C G T A C G T A G T C A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C G T A C T G A C G T A G T C A C G T C A G T A C T G A C T G G T A C A G C T
p-value:1e-9
log p-value:-2.139e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.5 +/- 25.7bp
Average Position of motif in Background40.6 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:RKCCMAGACAAMC---
TGCCAAAATAAACANN
 C T G A A C T G A G T C A G T C G T C A C G T A C T A G G T C A A G T C C G T A C G T A G T C A A G T C A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:RKCCMAGACAAMC---
-TCCCAGMCRAGCCCC
 C T G A A C T G A G T C A G T C G T C A C G T A C T A G G T C A A G T C C G T A C G T A G T C A A G T C A C G T A C G T A C G T
A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:RKCCMAGACAAMC
---CCAGACAG--
 C T G A A C T G A G T C A G T C G T C A C G T A C T A G G T C A A G T C C G T A C G T A G T C A A G T C
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:RKCCMAGACAAMC
---BCAGACWA--
 C T G A A C T G A G T C A G T C G T C A C G T A C T A G G T C A A G T C C G T A C G T A G T C A A G T C
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:RKCCMAGACAAMC
---CCAGACRSVB
 C T G A A C T G A G T C A G T C G T C A C G T A C T A G G T C A A G T C C G T A C G T A G T C A A G T C
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--RKCCMAGACAAMC--
CAAATCCAGACATCACA
 A C G T A C G T C T G A A C T G A G T C A G T C G T C A C G T A C T A G G T C A A G T C C G T A C G T A G T C A A G T C A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RKCCMAGACAAMC
TGCCCAGNHW---
 C T G A A C T G A G T C A G T C G T C A C G T A C T A G G T C A A G T C C G T A C G T A G T C A A G T C
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:RKCCMAGACAAMC----
-AAACAGACAAAGGAAT
 C T G A A C T G A G T C A G T C G T C A C G T A C T A G G T C A A G T C C G T A C G T A G T C A A G T C A C G T A C G T A C G T A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:RKCCMAGACAAMC-
----AAAACAAAGG
 C T G A A C T G A G T C A G T C G T C A C G T A C T A G G T C A A G T C C G T A C G T A G T C A A G T C A C G T
A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--RKCCMAGACAAMC--
AACACCAAAACAAAGGA
 A C G T A C G T C T G A A C T G A G T C A G T C G T C A C G T A C T A G G T C A A G T C C G T A C G T A G T C A A G T C A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A