Information for 5-GAACAGGTCA (Motif 4)

A T C G T C G A C T G A A T G C C G T A C T A G A T C G A C G T G A T C C T G A
Reverse Opposite:
G A C T C T A G T G C A T A G C G A T C G C A T A T C G G A C T A G C T T A G C
p-value:1e-18
log p-value:-4.195e+01
Information Content per bp:1.656
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif9.54%
Number of Background Sequences with motif1424.4
Percentage of Background Sequences with motif3.05%
Average Position of motif in Targets43.3 +/- 26.5bp
Average Position of motif in Background49.4 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAACAGGTCA
ANGNAAAGGTCA
 A C G T A C G T A T C G T C G A C T G A A T G C C G T A C T A G A T C G A C G T G A T C C T G A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GAACAGGTCA
--TRAGGTCA
 A T C G T C G A C T G A A T G C C G T A C T A G A T C G A C G T G A T C C T G A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GAACAGGTCA
CCAGGAACAG----
 A C G T A C G T A C G T A C G T A T C G T C G A C T G A A T G C C G T A C T A G A T C G A C G T G A T C C T G A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GAACAGGTCA
----AGGTCA
 A T C G T C G A C T G A A T G C C G T A C T A G A T C G A C G T G A T C C T G A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAACAGGTCA----
TCTCAAAGGTCACGAG
 A C G T A C G T A T C G T C G A C T G A A T G C C G T A C T A G A T C G A C G T G A T C C T G A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAACAGGTCA
--AGRGGTCA
 A T C G T C G A C T G A A T G C C G T A C T A G A T C G A C G T G A T C C T G A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAACAGGTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T A T C G T C G A C T G A A T G C C G T A C T A G A T C G A C G T G A T C C T G A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GAACAGGTCA-
---AAGGTCAC
 A T C G T C G A C T G A A T G C C G T A C T A G A T C G A C G T G A T C C T G A A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

Nr2e1/MA0676.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GAACAGGTCA-
--AAAAGTCAA
 A T C G T C G A C T G A A T G C C G T A C T A G A T C G A C G T G A T C C T G A A C G T
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

XBP1/MA0844.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAACAGGTCA--
AATGCCACGTCATC
 A C G T A C G T A T C G T C G A C T G A A T G C C G T A C T A G A T C G A C G T G A T C C T G A A C G T A C G T
C G T A C T G A A C G T C A T G G T A C A G T C C T G A G A T C C T A G A G C T T G A C C T G A A C G T A G T C