Information for 3-AAACAATGRV (Motif 3)

C T G A T G C A C G T A A T G C C G T A C T G A C G A T C T A G C T A G T G A C
Reverse Opposite:
A C T G G A T C G A T C C G T A A G C T C G A T A T C G A C G T A C G T G A C T
p-value:1e-44
log p-value:-1.017e+02
Information Content per bp:1.676
Number of Target Sequences with motif191.0
Percentage of Target Sequences with motif22.50%
Number of Background Sequences with motif3377.5
Percentage of Background Sequences with motif7.22%
Average Position of motif in Targets55.7 +/- 24.7bp
Average Position of motif in Background50.0 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:AAACAATGRV
RAACAATGGN
 C T G A T G C A C G T A A T G C C G T A C T G A C G A T C T A G C T A G T G A C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-AAACAATGRV
VRAACAATGG-
 A C G T C T G A T G C A C G T A A T G C C G T A C T G A C G A T C T A G C T A G T G A C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:AAACAATGRV
GAACAATGG-
 C T G A T G C A C G T A A T G C C G T A C T G A C G A T C T A G C T A G T G A C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.93
Offset:-5
Orientation:forward strand
Alignment:-----AAACAATGRV--
TCACGGAACAATAGGTG
 A C G T A C G T A C G T A C G T A C G T C T G A T G C A C G T A A T G C C G T A C T G A C G A T C T A G C T A G T G A C A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---AAACAATGRV--
CTCACACAATGGCGC
 A C G T A C G T A C G T C T G A T G C A C G T A A T G C C G T A C T G A C G A T C T A G C T A G T G A C A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-AAACAATGRV
AAAACAATGG-
 A C G T C T G A T G C A C G T A A T G C C G T A C T G A C G A T C T A G C T A G T G A C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-AAACAATGRV
RNAACAATGG-
 A C G T C T G A T G C A C G T A A T G C C G T A C T G A C G A T C T A G C T A G T G A C
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:AAACAATGRV
GAACAATGGN
 C T G A T G C A C G T A A T G C C G T A C T G A C G A T C T A G C T A G T G A C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---AAACAATGRV---
AATGAACAATGGAATT
 A C G T A C G T A C G T C T G A T G C A C G T A A T G C C G T A C T G A C G A T C T A G C T A G T G A C A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:AAACAATGRV
-GACAATGNN
 C T G A T G C A C G T A A T G C C G T A C T G A C G A T C T A G C T A G T G A C
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G