Information for 14-AAGGACTCTTTGT (Motif 12)

T C G A C G T A C T A G A T C G T C G A A T G C A G C T T G A C C G A T A C G T C G A T A T C G A C G T
Reverse Opposite:
G T C A T A G C C G T A T G C A C G T A A C T G C T G A T A C G A G C T T A G C G A T C G C A T A C G T
p-value:1e-11
log p-value:-2.564e+01
Information Content per bp:1.659
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.36%
Number of Background Sequences with motif145.5
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets53.1 +/- 27.1bp
Average Position of motif in Background52.8 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:0.78
Offset:1
Orientation:forward strand
Alignment:AAGGACTCTTTGT
-AGGVNCCTTTGT
 T C G A C G T A C T A G A T C G T C G A A T G C A G C T T G A C C G A T A C G T C G A T A T C G A C G T
A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

SOX10/MA0442.1/Jaspar

Match Rank:2
Score:0.68
Offset:7
Orientation:forward strand
Alignment:AAGGACTCTTTGT
-------CTTTGT
 T C G A C G T A C T A G A T C G T C G A A T G C A G C T T G A C C G A T A C G T C G A T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.66
Offset:6
Orientation:forward strand
Alignment:AAGGACTCTTTGT---
------CCWTTGTYYB
 T C G A C G T A C T A G A T C G T C G A A T G C A G C T T G A C C G A T A C G T C G A T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.65
Offset:6
Orientation:forward strand
Alignment:AAGGACTCTTTGT---
------YCTTTGTTCC
 T C G A C G T A C T A G A T C G T C G A A T G C A G C T T G A C C G A T A C G T C G A T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAGGACTCTTTGT--
VAGRACAKNCTGTBC
 T C G A C G T A C T A G A T C G T C G A A T G C A G C T T G A C C G A T A C G T C G A T A T C G A C G T A C G T A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAGGACTCTTTGT--
VAGRACAKWCTGTYC
 T C G A C G T A C T A G A T C G T C G A A T G C A G C T T G A C C G A T A C G T C G A T A T C G A C G T A C G T A C G T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AAGGACTCTTTGT------
--TNNTCCTTTGTTCTNNT
 T C G A C G T A C T A G A T C G T C G A A T G C A G C T T G A C C G A T A C G T C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.61
Offset:6
Orientation:forward strand
Alignment:AAGGACTCTTTGT-
------CCWTTGTY
 T C G A C G T A C T A G A T C G T C G A A T G C A G C T T G A C C G A T A C G T C G A T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AAGGACTCTTTGT------
--NNNTCCTTTGTTCTNNN
 T C G A C G T A C T A G A T C G T C G A A T G C A G C T T G A C C G A T A C G T C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.61
Offset:6
Orientation:forward strand
Alignment:AAGGACTCTTTGT---
------CCATTGTTNY
 T C G A C G T A C T A G A T C G T C G A A T G C A G C T T G A C C G A T A C G T C G A T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T