Information for 1-HAGGTCASSSTGACCT (Motif 1)

G A T C C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A G C T
Reverse Opposite:
T C G A C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T C T A G
p-value:1e-238
log p-value:-5.500e+02
Information Content per bp:1.558
Number of Target Sequences with motif239.0
Percentage of Target Sequences with motif28.15%
Number of Background Sequences with motif594.8
Percentage of Background Sequences with motif1.27%
Average Position of motif in Targets49.3 +/- 22.2bp
Average Position of motif in Background50.5 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.96
Offset:2
Orientation:reverse strand
Alignment:HAGGTCASSSTGACCT-
--GGTCANNGTGACCTN
 G A T C C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A G C T A C G T
A C G T A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:HAGGTCASSSTGACCT
-AGGNCANNGTGACCT
 G A T C C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A G C T
A C G T C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:HAGGTCASSSTGACCT-
CAGGTCACCGTGACCTT
 G A T C C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A G C T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-HAGGTCASSSTGACCT---
GTAGGTCACGGTGACCTACT
 A C G T G A T C C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A G C T A C G T A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:HAGGTCASSSTGACCT-
-AGNACAGNCTGTTCTN
 G A T C C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A G C T A C G T
A C G T C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.69
Offset:10
Orientation:reverse strand
Alignment:HAGGTCASSSTGACCT
----------TGACCT
 G A T C C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.67
Offset:10
Orientation:reverse strand
Alignment:HAGGTCASSSTGACCT--
----------TGACCTYA
 G A T C C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:HAGGTCASSSTGACCT-
-AGNACANNNTGTNCTN
 G A T C C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A G C T A C G T
A C G T C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.66
Offset:10
Orientation:reverse strand
Alignment:HAGGTCASSSTGACCT--
----------TGACCYCT
 G A T C C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:HAGGTCASSSTGACCT
VAGRACAKWCTGTYC-
 G A T C C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A G C T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T