Information for 7-STRGYTAGCAAYA (Motif 9)

A T C G A C G T C T A G A C T G A G C T A C G T C G T A A C T G G T A C C G T A G T C A A G T C C G T A
Reverse Opposite:
A C G T C T A G A C G T A C G T A C T G G T A C A C G T C G T A C T G A A G T C A G T C C G T A A T G C
p-value:1e-13
log p-value:-3.053e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.7 +/- 29.5bp
Average Position of motif in Background51.5 +/- 20.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:STRGYTAGCAAYA--
CCGCATAGCAACGGA
 A T C G A C G T C T A G A C T G A G C T A C G T C G T A A C T G G T A C C G T A G T C A A G T C C G T A A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:STRGYTAGCAAYA-
--SCCTAGCAACAG
 A T C G A C G T C T A G A C T G A G C T A C G T C G T A A C T G G T A C C G T A G T C A A G T C C G T A A C G T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----STRGYTAGCAAYA
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T A C G T A T C G A C G T C T A G A C T G A G C T A C G T C G T A A C T G G T A C C G T A G T C A A G T C C G T A
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----STRGYTAGCAAYA------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A T C G A C G T C T A G A C T G A G C T A C G T C G T A A C T G G T A C C G T A G T C A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:STRGYTAGCAAYA--
-----TTGCAACATN
 A T C G A C G T C T A G A C T G A G C T A C G T C G T A A C T G G T A C C G T A G T C A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----STRGYTAGCAAYA
GAAAACTAGTTAACATC-
 A C G T A C G T A C G T A C G T A C G T A T C G A C G T C T A G A C T G A G C T A C G T C G T A A C T G G T A C C G T A G T C A A G T C C G T A
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:STRGYTAGCAAYA--
TACCATAGCAACGGT
 A T C G A C G T C T A G A C T G A G C T A C G T C G T A A C T G G T A C C G T A G T C A A G T C C G T A A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--STRGYTAGCAAYA
TGTTKCCTAGCAACM
 A C G T A C G T A T C G A C G T C T A G A C T G A G C T A C G T C G T A A C T G G T A C C G T A G T C A A G T C C G T A
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

HMBOX1/MA0895.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-STRGYTAGCAAYA
ACTAGTTAAC----
 A C G T A T C G A C G T C T A G A C T G A G C T A C G T C G T A A C T G G T A C C G T A G T C A A G T C C G T A
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T A C G T A C G T

PB0155.1_Osr2_2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---STRGYTAGCAAYA
NNTGTAGGTAGCANNT
 A C G T A C G T A C G T A T C G A C G T C T A G A C T G A G C T A C G T C G T A A C T G G T A C C G T A G T C A A G T C C G T A
A C T G C T A G C G A T C A T G A G C T C G T A C T A G A C T G C G A T C T G A T A C G A G T C C T G A C T G A C T A G G A C T