Information for 17-GRTCSWYGAYCYKKGG (Motif 30)

A C T G C T A G A C G T A G T C A T G C C G A T A G C T A C T G C T G A A G C T A G T C G A T C A C G T A C T G A C T G A C T G
Reverse Opposite:
G T A C A G T C G T A C G T C A C T A G A C T G C T G A A G C T A G T C T C G A C G T A A T C G A C T G C G T A A G T C A G T C
p-value:1e-6
log p-value:-1.403e+01
Information Content per bp:1.789
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 24.7bp
Average Position of motif in Background62.6 +/- 15.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GRTCSWYGAYCYKKGG
NAGGTCANTGACCT----
 A C G T A C G T A C T G C T A G A C G T A G T C A T G C C G A T A G C T A C T G C T G A A G C T A G T C G A T C A C G T A C T G A C T G A C T G
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GRTCSWYGAYCYKKGG
TGACCTTGACCT----
 A C T G C T A G A C G T A G T C A T G C C G A T A G C T A C T G C T G A A G C T A G T C G A T C A C G T A C T G A C T G A C T G
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GRTCSWYGAYCYKKGG
-----CTGACCTTTG-
 A C T G C T A G A C G T A G T C A T G C C G A T A G C T A C T G C T G A A G C T A G T C G A T C A C G T A C T G A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GRTCSWYGAYCYKKGG
TGGACTTTGNNCTNTG-
 A C G T A C T G C T A G A C G T A G T C A T G C C G A T A G C T A C T G C T G A A G C T A G T C G A T C A C G T A C T G A C T G A C T G
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GRTCSWYGAYCYKKGG
--CNNTTGACCTTTG-
 A C T G C T A G A C G T A G T C A T G C C G A T A G C T A C T G C T G A A G C T A G T C G A T C A C G T A C T G A C T G A C T G
A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:6
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GRTCSWYGAYCYKKGG
ATTGGACTTTGACCCC---
 A C G T A C G T A C G T A C T G C T A G A C G T A G T C A T G C C G A T A G C T A C T G C T G A A G C T A G T C G A T C A C G T A C T G A C T G A C T G
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GRTCSWYGAYCYKKGG
TGACCTTGACCT----
 A C T G C T A G A C G T A G T C A T G C C G A T A G C T A C T G C T G A A G C T A G T C G A T C A C G T A C T G A C T G A C T G
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GRTCSWYGAYCYKKGG
GRTGMTRGAGCC----
 A C T G C T A G A C G T A G T C A T G C C G A T A G C T A C T G C T G A A G C T A G T C G A T C A C G T A C T G A C T G A C T G
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GRTCSWYGAYCYKKGG--
--NNNNTGACCTTTNNNN
 A C T G C T A G A C G T A G T C A T G C C G A T A G C T A C T G C T G A A G C T A G T C G A T C A C G T A C T G A C T G A C T G A C G T A C G T
A C G T A C G T A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---GRTCSWYGAYCYKKGG
GTTGACCTTTGACCTTT--
 A C G T A C G T A C G T A C T G C T A G A C G T A G T C A T G C C G A T A G C T A C T G C T G A A G C T A G T C G A T C A C G T A C T G A C T G A C T G
T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T A C G T A C G T