Information for 9-MGGGVAAGTTMCCTGC (Motif 12)

T G C A C A T G C T A G C T A G T A G C C G T A T G C A T C A G A C G T C A G T G T C A T A G C A T G C C G A T A T C G G T A C
Reverse Opposite:
A C T G T A G C C G T A A T C G A T C G C A G T G T C A T C G A A G T C A C G T C G A T A T C G G A T C A G T C G T A C A C G T
p-value:1e-12
log p-value:-2.820e+01
Information Content per bp:1.620
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.75%
Number of Background Sequences with motif169.0
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets50.4 +/- 22.5bp
Average Position of motif in Background50.2 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:MGGGVAAGTTMCCTGC
--GGGAAATCCCCN--
 T G C A C A T G C T A G C T A G T A G C C G T A T G C A T C A G A C G T C A G T G T C A T A G C A T G C C G A T A T C G G T A C
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:MGGGVAAGTTMCCTGC
---GGAAATTCCC---
 T G C A C A T G C T A G C T A G T A G C C G T A T G C A T C A G A C G T C A G T G T C A T A G C A T G C C G A T A T C G G T A C
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:MGGGVAAGTTMCCTGC--
-GGGRAARRGRMCAGMTG
 T G C A C A T G C T A G C T A G T A G C C G T A T G C A T C A G A C G T C A G T G T C A T A G C A T G C C G A T A T C G G T A C A C G T A C G T
A C G T C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:MGGGVAAGTTMCCTGC
AAGGCAAGTGT-----
 T G C A C A T G C T A G C T A G T A G C C G T A T G C A T C A G A C G T C A G T G T C A T A G C A T G C C G A T A T C G G T A C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T A C G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---MGGGVAAGTTMCCTGC
TTAAGAGGAAGTTA-----
 A C G T A C G T A C G T T G C A C A T G C T A G C T A G T A G C C G T A T G C A T C A G A C G T C A G T G T C A T A G C A T G C C G A T A T C G G T A C
A G C T C G A T C G T A C G T A T C A G T C G A C T A G A C T G C G T A C G T A T A C G G A C T C G A T G T A C A C G T A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:MGGGVAAGTTMCCTGC
---GGAAATTCCC---
 T G C A C A T G C T A G C T A G T A G C C G T A T G C A T C A G A C G T C A G T G T C A T A G C A T G C C G A T A T C G G T A C
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:MGGGVAAGTTMCCTGC
---GGAAANCCCC---
 T G C A C A T G C T A G C T A G T A G C C G T A T G C A T C A G A C G T C A G T G T C A T A G C A T G C C G A T A T C G G T A C
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:MGGGVAAGTTMCCTGC
---GGAAATCCCC---
 T G C A C A T G C T A G C T A G T A G C C G T A T G C A T C A G A C G T C A G T G T C A T A G C A T G C C G A T A T C G G T A C
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:MGGGVAAGTTMCCTGC
AGAGGAAGTG------
 T G C A C A T G C T A G C T A G T A G C C G T A T G C A T C A G A C G T C A G T G T C A T A G C A T G C C G A T A T C G G T A C
C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-MGGGVAAGTTMCCTGC
AATGGAAAAT-------
 A C G T T G C A C A T G C T A G C T A G T A G C C G T A T G C A T C A G A C G T C A G T G T C A T A G C A T G C C G A T A T C G G T A C
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T