Information for 1-RGGTCACSSTGACCTK (Motif 1)

C T G A C A T G C T A G C A G T A G T C C T G A A T G C A T G C A T C G G A C T T A C G T G C A G A T C G T A C G A C T A C T G
Reverse Opposite:
T G A C C T G A C A T G C T A G A C G T A T G C C T G A T A G C T A C G A T C G G A C T T C A G G T C A G A T C G A T C G A C T
p-value:1e-196
log p-value:-4.530e+02
Information Content per bp:1.566
Number of Target Sequences with motif223.0
Percentage of Target Sequences with motif27.88%
Number of Background Sequences with motif783.9
Percentage of Background Sequences with motif1.67%
Average Position of motif in Targets52.4 +/- 21.4bp
Average Position of motif in Background51.0 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:RGGTCACSSTGACCTK
-GGTCANNGTGACCTN
 C T G A C A T G C T A G C A G T A G T C C T G A A T G C A T G C A T C G G A C T T A C G T G C A G A T C G T A C G A C T A C T G
A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.95
Offset:0
Orientation:forward strand
Alignment:RGGTCACSSTGACCTK
AGGTCACCCTGACCT-
 C T G A C A T G C T A G C A G T A G T C C T G A A T G C A T G C A T C G G A C T T A C G T G C A G A T C G T A C G A C T A C T G
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-RGGTCACSSTGACCTK
AAGGTCACGGTGACCTG
 A C G T C T G A C A T G C T A G C A G T A G T C C T G A A T G C A T G C A T C G G A C T T A C G T G C A G A T C G T A C G A C T A C T G
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---RGGTCACSSTGACCTK-
AGTAGGTCACNGTGACCTAC
 A C G T A C G T A C G T C T G A C A T G C T A G C A G T A G T C C T G A A T G C A T G C A T C G G A C T T A C G T G C A G A T C G T A C G A C T A C T G A C G T
G C T A A T C G C A G T C T G A C T A G A C T G C A G T A T G C G T C A G A T C T A G C A C T G C A G T A T C G T G C A G A T C A T G C A G C T C G T A A T G C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:RGGTCACSSTGACCTK
AGNACAGNCTGTTCTN
 C T G A C A T G C T A G C A G T A G T C C T G A A T G C A T G C A T C G G A C T T A C G T G C A G A T C G T A C G A C T A C T G
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:RGGTCACSSTGACCTK
AGNACANNNTGTNCTN
 C T G A C A T G C T A G C A G T A G T C C T G A A T G C A T G C A T C G G A C T T A C G T G C A G A T C G T A C G A C T A C T G
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.67
Offset:9
Orientation:reverse strand
Alignment:RGGTCACSSTGACCTK
---------TGACCT-
 C T G A C A T G C T A G C A G T A G T C C T G A A T G C A T G C A T C G G A C T T A C G T G C A G A T C G T A C G A C T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.67
Offset:9
Orientation:reverse strand
Alignment:RGGTCACSSTGACCTK-
---------TGACCTYA
 C T G A C A T G C T A G C A G T A G T C C T G A A T G C A T G C A T C G G A C T T A C G T G C A G A T C G T A C G A C T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-RGGTCACSSTGACCTK
VAGRACAKWCTGTYC--
 A C G T C T G A C A T G C T A G C A G T A G T C C T G A A T G C A T G C A T C G G A C T T A C G T G C A G A T C G T A C G A C T A C T G
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.65
Offset:9
Orientation:reverse strand
Alignment:RGGTCACSSTGACCTK-
---------TGACCYCT
 C T G A C A T G C T A G C A G T A G T C C T G A A T G C A T G C A T C G G A C T T A C G T G C A G A T C G T A C G A C T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T