Information for 1-TGTGCATTGTTATGCA (Motif 1)

A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T G T C A A C G T A C T G A G T C G T C A
Reverse Opposite:
A C G T A C T G G T A C C G T A A C G T G T C A C G T A A G T C C G T A C G T A A C G T C T A G A G T C G T C A A G T C G T C A
p-value:1e-18
log p-value:-4.192e+01
Information Content per bp:1.926
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif26.09%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.8 +/- 21.2bp
Average Position of motif in Background70.7 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.72
Offset:4
Orientation:forward strand
Alignment:TGTGCATTGTTATGCA---
----CTTTGTTATGCAAAT
 A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T G T C A A C G T A C T G A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:TGTGCATTGTTATGCA---
----CATTGTTATGCAAAT
 A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T G T C A A C G T A C T G A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

PB0074.1_Sox8_1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGTGCATTGTTATGCA
GTATCTATTGTTCTTTA
 A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T G T C A A C G T A C T G A G T C G T C A
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A

Sox5/MA0087.1/Jaspar

Match Rank:4
Score:0.65
Offset:5
Orientation:forward strand
Alignment:TGTGCATTGTTATGCA
-----ATTGTTA----
 A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T G T C A A C G T A C T G A G T C G T C A
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T A C G T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGTGCATTGTTATGCA-
-TTCAATTGTTCTAAAA
 A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T G T C A A C G T A C T G A G T C G T C A A C G T
A C G T A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TGTGCATTGTTATGCA
---CCATTGTTYB---
 A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T G T C A A C G T A C T G A G T C G T C A
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGTGCATTGTTATGCA-
---TAATTGTTCTAAAC
 A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T G T C A A C G T A C T G A G T C G T C A A C G T
A C G T A C G T A C G T G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGTGCATTGTTATGCA
---CCATTGTTNY---
 A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T G T C A A C G T A C T G A G T C G T C A
A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.61
Offset:5
Orientation:forward strand
Alignment:TGTGCATTGTTATGCA
-----ATTGTT-----
 A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T G T C A A C G T A C T G A G T C G T C A
A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGTGCATTGTTATGCA
NNNTCCTTTGTTCTNNN
 A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T G T C A A C G T A C T G A G T C G T C A
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T