Information for 4-STAAGTSSSGGCG (Motif 5)

A T C G C G A T C G T A G T C A A C T G A C G T A T C G A T G C A T C G A C T G A C T G A G T C A T C G
Reverse Opposite:
A T G C A C T G A G T C A G T C A T G C A T C G A T G C C G T A A G T C A C G T A C G T C G T A A T G C
p-value:1e-11
log p-value:-2.651e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.0 +/- 24.0bp
Average Position of motif in Background58.2 +/- 12.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:STAAGTSSSGGCG
TTAAGTGGN----
 A T C G C G A T C G T A G T C A A C T G A C G T A T C G A T G C A T C G A C T G A C T G A G T C A T C G
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:STAAGTSSSGGCG
TTAAGTGGT----
 A T C G C G A T C G T A G T C A A C T G A C G T A T C G A T G C A T C G A C T G A C T G A G T C A T C G
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:STAAGTSSSGGCG
TTAAGTGC-----
 A T C G C G A T C G T A G T C A A C T G A C G T A T C G A T G C A T C G A C T G A C T G A G T C A T C G
G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-STAAGTSSSGGCG
NTCAAGTGGN----
 A C G T A T C G C G A T C G T A G T C A A C T G A C G T A T C G A T G C A T C G A C T G A C T G A G T C A T C G
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:STAAGTSSSGGCG
TTAAGTGCTT---
 A T C G C G A T C G T A G T C A A C T G A C G T A T C G A T G C A T C G A C T G A C T G A G T C A T C G
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T

PB0010.1_Egr1_1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:STAAGTSSSGGCG--
-ANTGCGGGGGCGGN
 A T C G C G A T C G T A G T C A A C T G A C G T A T C G A T G C A T C G A C T G A C T G A G T C A T C G A C G T A C G T
A C G T G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:STAAGTSSSGGCG
TTRAGTGSYK---
 A T C G C G A T C G T A G T C A A C T G A C G T A T C G A T G C A T C G A C T G A C T G A G T C A T C G
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:STAAGTSSSGGCG
CTAATKGV-----
 A T C G C G A T C G T A G T C A A C T G A C G T A T C G A T G C A T C G A C T G A C T G A G T C A T C G
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----STAAGTSSSGGCG
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A T C G C G A T C G T A G T C A A C T G A C G T A T C G A T G C A T C G A C T G A C T G A G T C A T C G
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-STAAGTSSSGGCG
GCTAATTGCT----
 A C G T A T C G C G A T C G T A G T C A A C T G A C G T A T C G A T G C A T C G A C T G A C T G A G T C A T C G
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T A C G T A C G T A C G T A C G T