Information for 3-GGAGAGCCCCGGA (Motif 4)

A C T G A T C G C G T A A C T G C T G A C T A G A G T C A G T C A G T C A G T C A C T G A C T G C T G A
Reverse Opposite:
A G C T G T A C A G T C A C T G A C T G A C T G A C T G A G T C A G C T A G T C A C G T A T G C A G T C
p-value:1e-11
log p-value:-2.695e+01
Information Content per bp:1.903
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.6 +/- 26.1bp
Average Position of motif in Background46.3 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGAGAGCCCCGGA
GGAAATCCCC---
 A C T G A T C G C G T A A C T G C T G A C T A G A G T C A G T C A G T C A G T C A C T G A C T G C T G A
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGAGAGCCCCGGA
GGAAANCCCC---
 A C T G A T C G C G T A A C T G C T G A C T A G A G T C A G T C A G T C A G T C A C T G A C T G C T G A
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GGAGAGCCCCGGA
NNNGGGGCGCCCCCNN
 A C G T A C G T A C G T A C T G A T C G C G T A A C T G C T G A C T A G A G T C A G T C A G T C A G T C A C T G A C T G C T G A
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGAGAGCCCCGGA
GGAAATTCCC---
 A C T G A T C G C G T A A C T G C T G A C T A G A G T C A G T C A G T C A G T C A C T G A C T G C T G A
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGAGAGCCCCGGA
GGGAAATCCCCN--
 A C G T A C T G A T C G C G T A A C T G C T G A C T A G A G T C A G T C A G T C A G T C A C T G A C T G C T G A
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGAGAGCCCCGGA
GGAAATTCCC---
 A C T G A T C G C G T A A C T G C T G A C T A G A G T C A G T C A G T C A G T C A C T G A C T G C T G A
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGAGAGCCCCGGA
-GTGGGCCCCA--
 A C T G A T C G C G T A A C T G C T G A C T A G A G T C A G T C A G T C A G T C A C T G A C T G C T G A
A C G T T A C G G A C T A C T G A C T G C T A G A T G C A G T C A G T C A G T C C T G A A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGAGAGCCCCGGA
GGGGGAATCCCC---
 A C G T A C G T A C T G A T C G C G T A A C T G C T G A C T A G A G T C A G T C A G T C A G T C A C T G A C T G C T G A
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGAGAGCCCCGGA---
AGGAGACCCCCAATTTG
 A C G T A C T G A T C G C G T A A C T G C T G A C T A G A G T C A G T C A G T C A G T C A C T G A C T G C T G A A C G T A C G T A C G T
C G T A C A T G C A T G C G T A C A T G C T G A T G A C G T A C T A G C A G T C G T A C G C T A G C T A C G A T C G A T C G A T T C A G

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:GGAGAGCCCCGGA----
-------RCCGGAARYN
 A C T G A T C G C G T A A C T G C T G A C T A G A G T C A G T C A G T C A G T C A C T G A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C T G A C C T A G C A T G G C T A G C T A T C A G G A C T C T A G