Information for 1-RCACTTGGCTSCW (Motif 2)

C T A G A G T C C G T A A G T C A C G T C G A T A C T G A C T G A G T C A G C T A T C G A G T C C G T A
Reverse Opposite:
C G A T A C T G T A G C C T G A A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C T G A G T C
p-value:1e-13
log p-value:-3.065e+01
Information Content per bp:1.892
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.2 +/- 24.1bp
Average Position of motif in Background34.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:RCACTTGGCTSCW
NNACTTGCCTT--
 C T A G A G T C C G T A A G T C A C G T C G A T A C T G A C T G A G T C A G C T A T C G A G T C C G T A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

Creb3l2/MA0608.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:RCACTTGGCTSCW
ACACGTGGC----
 C T A G A G T C C G T A A G T C A C G T C G A T A C T G A C T G A G T C A G C T A T C G A G T C C G T A
G C T A A T G C C G T A A G T C A C T G A C G T A T C G C A T G G T A C A C G T A C G T A C G T A C G T

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-RCACTTGGCTSCW
GTCACGTGGM----
 A C G T C T A G A G T C C G T A A G T C A C G T C G A T A C T G A C T G A G T C A G C T A T C G A G T C C G T A
T C A G C A G T A G T C C G T A A T G C T C A G G C A T A C T G A C T G T G A C A C G T A C G T A C G T A C G T

Mycn/MA0104.3/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RCACTTGGCTSCW
-CACGTGGC----
 C T A G A G T C C G T A A G T C A C G T C G A T A C T G A C T G A G T C A G C T A T C G A G T C C G T A
A C G T A G T C C G T A A G T C A C T G A C G T A C T G A T C G G A T C A C G T A C G T A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--RCACTTGGCTSCW
AAGCACATGG-----
 A C G T A C G T C T A G A G T C C G T A A G T C A C G T C G A T A C T G A C T G A G T C A G C T A T C G A G T C C G T A
T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:RCACTTGGCTSCW
---NTTGGCANN-
 C T A G A G T C C G T A A G T C A C G T C G A T A C T G A C T G A G T C A G C T A T C G A G T C C G T A
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-RCACTTGGCTSCW
ACCACTTGAA----
 A C G T C T A G A G T C C G T A A G T C A C G T C G A T A C T G A C T G A G T C A G C T A T C G A G T C C G T A
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.64
Offset:4
Orientation:forward strand
Alignment:RCACTTGGCTSCW
----TTGGCA---
 C T A G A G T C C G T A A G T C A C G T C G A T A C T G A C T G A G T C A G C T A T C G A G T C C G T A
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

HEY2/MA0649.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RCACTTGGCTSCW
GGCACGTGNC----
 A C G T C T A G A G T C C G T A A G T C A C G T C G A T A C T G A C T G A G T C A G C T A T C G A G T C C G T A
A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T A C G T A C G T A C G T

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:RCACTTGGCTSCW
-CACGTGGN----
 C T A G A G T C C G T A A G T C A C G T C G A T A C T G A C T G A G T C A G C T A T C G A G T C C G T A
A C G T G T A C C T G A A G T C C T A G G A C T A C T G A T C G A G C T A C G T A C G T A C G T A C G T