Information for 7-CGTCACGGCA (Motif 28)

A G T C A T C G A C G T A T G C G T C A A G T C A C T G A C T G A G T C C T G A
Reverse Opposite:
A G C T A C T G A G T C A G T C A C T G A C G T A T C G C G T A A T G C T C A G
p-value:1e-4
log p-value:-9.466e+00
Information Content per bp:1.928
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif101.6
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets45.3 +/- 26.9bp
Average Position of motif in Background50.0 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRE(bZIP)/Promoter/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CGTCACGGCA-
CGGTGACGTCAC
 A C G T A G T C A T C G A C G T A T G C G T C A A G T C A C T G A C T G A G T C C T G A A C G T
A T G C A T C G T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CGTCACGGCA
AGTCACGC--
 A G T C A T C G A C G T A T G C G T C A A G T C A C T G A C T G A G T C C T G A
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CGTCACGGCA-
-ATCACCCCAT
 A G T C A T C G A C G T A T G C G T C A A G T C A C T G A C T G A G T C C T G A A C G T
A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGTCACGGCA-
CNGTCACGCCAC
 A C G T A G T C A T C G A C G T A T G C G T C A A G T C A C T G A C T G A G T C C T G A A C G T
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

SREBF2/MA0596.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGTCACGGCA-
-ATCACCCCAT
 A G T C A T C G A C G T A T G C G T C A A G T C A C T G A C T G A G T C C T G A A C G T
A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T

SREBF1/MA0595.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CGTCACGGCA-
-ATCACCCCAC
 A G T C A T C G A C G T A T G C G T C A A G T C A C T G A C T G A G T C C T G A A C G T
A C G T T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C

CREB1/MA0018.2/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CGTCACGGCA
--TGACGTCA
 A G T C A T C G A C G T A T G C G T C A A G T C A C T G A C T G A G T C C T G A
A C G T A C G T A C G T A T C G C G T A A T G C C T A G A G C T G T A C C G T A

Atf1/MA0604.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGTCACGGCA
TACGTCAT----
 A C G T A C G T A G T C A T C G A C G T A T G C G T C A A G T C A C T G A C T G A G T C C T G A
A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T A C G T A C G T A C G T A C G T

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGTCACGGCA---
-RTGACGTCAYCN
 A G T C A T C G A C G T A T G C G T C A A G T C A C T G A C T G A G T C C T G A A C G T A C G T A C G T
A C G T T C G A G A C T A C T G C G T A A G T C T C A G G A C T T G A C C T G A A G C T G A T C A T C G

JDP2(var.2)/MA0656.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGTCACGGCA--
GATGACGTCATC
 A G T C A T C G A C G T A T G C G T C A A G T C A C T G A C T G A G T C C T G A A C G T A C G T
A C T G T C G A A C G T A C T G C T G A A G T C T C A G A C G T G T A C C T G A A G C T A T G C