Information for 10-GCCGCATCAAGGC (Motif 19)

A C T G A G T C A G T C A C T G A G T C C G T A A C G T A G T C C G T A C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T A C G T A C T G C G T A A C G T A C T G A G T C A C T G A C T G A G T C
p-value:1e-7
log p-value:-1.672e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.8 +/- 16.8bp
Average Position of motif in Background36.9 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GCCGCATCAAGGC--
-----NTCAAGGTCA
 A C T G A G T C A G T C A C T G A G T C C G T A A C G T A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

PB0024.1_Gcm1_1/Jaspar

Match Rank:2
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GCCGCATCAAGGC
TCGTACCCGCATCATT--
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C T G A G T C C G T A A C G T A G T C C G T A C G T A A C T G A C T G A G T C
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T A C G T A C G T

GCM2/MA0767.1/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCCGCATCAAGGC
TACCCGCATN-----
 A C G T A C G T A C T G A G T C A G T C A C T G A G T C C G T A A C G T A G T C C G T A C G T A A C T G A C T G A G T C
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GCCGCATCAAGGC--
-----BTCAAGGTCA
 A C T G A G T C A G T C A C T G A G T C C G T A A C G T A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GCCGCATCAAGGC----
-------CAAGGHCANV
 A C T G A G T C A G T C A C T G A G T C C G T A A C G T A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCCGCATCAAGGC----
NNNAGATCAAAGGANNN
 A C T G A G T C A G T C A C T G A G T C C G T A A C G T A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GCCGCATCAAGGC
---ACATCAAAGG
 A C T G A G T C A G T C A C T G A G T C C G T A A C G T A G T C C G T A C G T A A C T G A C T G A G T C
A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GCCGCATCAAGGC--
---ACATCAAAGGNA
 A C T G A G T C A G T C A C T G A G T C C G T A A C G T A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

PB0040.1_Lef1_1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCCGCATCAAGGC----
NANAGATCAAAGGGNNN
 A C T G A G T C A G T C A C T G A G T C C G T A A C G T A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

GCM1/MA0646.1/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---GCCGCATCAAGGC
GTACCCGCATN-----
 A C G T A C G T A C G T A C T G A G T C A G T C A C T G A G T C C G T A A C G T A G T C C G T A C G T A A C T G A C T G A G T C
T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G A C G T A C G T A C G T A C G T A C G T