Information for 6-YTGCCCTCAACCCTST (Motif 18)

A G T C A G C T A C T G G T A C G T A C G T A C A G C T A T G C C G T A C G T A G T A C A G T C A T G C A C G T A T C G A C G T
Reverse Opposite:
C G T A A T G C C G T A A T C G C T A G A C T G G A C T A C G T A T C G C T G A A C T G A C T G A C T G A G T C C T G A T C A G
p-value:1e-7
log p-value:-1.679e+01
Information Content per bp:1.785
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif11.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets54.1 +/- 16.8bp
Average Position of motif in Background46.5 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2C2/MA0504.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:YTGCCCTCAACCCTST
-TGACCTCTGACCCCN
 A G T C A G C T A C T G G T A C G T A C G T A C A G C T A T G C C G T A C G T A G T A C A G T C A T G C A C G T A T C G A C G T
A C G T G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:YTGCCCTCAACCCTST
CTGCCCGCA-------
 A G T C A G C T A C T G G T A C G T A C G T A C A G C T A T G C C G T A C G T A G T A C A G T C A T G C A C G T A T C G A C G T
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:YTGCCCTCAACCCTST
-TGACCTTTGCCCTA-
 A G T C A G C T A C T G G T A C G T A C G T A C A G C T A T G C C G T A C G T A G T A C A G T C A T G C A C G T A T C G A C G T
A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:YTGCCCTCAACCCTST
-TGACCTTTGACCTC-
 A G T C A G C T A C T G G T A C G T A C G T A C A G C T A T G C C G T A C G T A G T A C A G T C A T G C A C G T A T C G A C G T
A C G T G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:YTGCCCTCAACCCTST
-TGACCTYA-------
 A G T C A G C T A C T G G T A C G T A C G T A C A G C T A T G C C G T A C G T A G T A C A G T C A T G C A C G T A T C G A C G T
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX15/MA0803.1/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:YTGCCCTCAACCCTST
------TCACACCT--
 A G T C A G C T A C T G G T A C G T A C G T A C A G C T A T G C C G T A C G T A G T A C A G T C A T G C A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T A C G T A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-YTGCCCTCAACCCTST
GTTGACCTTTGACCTTT
 A C G T A G T C A G C T A C T G G T A C G T A C G T A C A G C T A T G C C G T A C G T A G T A C A G T C A T G C A C G T A T C G A C G T
T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T

TBX1/MA0805.1/Jaspar

Match Rank:8
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:YTGCCCTCAACCCTST
------TCACACCT--
 A G T C A G C T A C T G G T A C G T A C G T A C A G C T A T G C C G T A C G T A G T A C A G T C A T G C A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:YTGCCCTCAACCCTST
-TGACCTTTGCCCTAN
 A G T C A G C T A C T G G T A C G T A C G T A C A G C T A T G C C G T A C G T A G T A C A G T C A T G C A C G T A T C G A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:YTGCCCTCAACCCTST-------
---GCCTCCTCCMTCWGACTGKS
 A G T C A G C T A C T G G T A C G T A C G T A C A G C T A T G C C G T A C G T A G T A C A G T C A T G C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C