Information for 19-RAMGWSCCTGAMCKSA (Motif 30)

T C A G C G T A G T A C A C T G C G T A A T G C A G T C A G T C A C G T A C T G C G T A G T A C A G T C A C G T A T C G C G T A
Reverse Opposite:
A C G T T A G C G T C A A C T G A C T G A C G T A G T C C G T A A C T G A C T G A T C G C G A T A G T C A C T G A C G T A G C T
p-value:1e-6
log p-value:-1.556e+01
Information Content per bp:1.827
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.5 +/- 31.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:RAMGWSCCTGAMCKSA
--TGACCTTGACCT--
 T C A G C G T A G T A C A C T G C G T A A T G C A G T C A G T C A C G T A C T G C G T A G T A C A G T C A C G T A T C G C G T A
A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:RAMGWSCCTGAMCKSA
--TGACCTTGACCT--
 T C A G C G T A G T A C A C T G C G T A A T G C A G T C A G T C A C G T A C T G C G T A G T A C A G T C A C G T A T C G C G T A
A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.61
Offset:8
Orientation:reverse strand
Alignment:RAMGWSCCTGAMCKSA
--------TGACCTYA
 T C A G C G T A G T A C A C T G C G T A A T G C A G T C A G T C A C G T A C T G C G T A G T A C A G T C A C G T A T C G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:RAMGWSCCTGAMCKSA
--------TGACCT--
 T C A G C G T A G T A C A C T G C G T A A T G C A G T C A G T C A C G T A C T G C G T A G T A C A G T C A C G T A T C G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:RAMGWSCCTGAMCKSA
-ATGACCTTGAA----
 T C A G C G T A G T A C A C T G C G T A A T G C A G T C A G T C A C G T A C T G C G T A G T A C A G T C A C G T A T C G C G T A
A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RAMGWSCCTGAMCKSA
-AAGACCCYYN-----
 T C A G C G T A G T A C A C T G C G T A A T G C A G T C A G T C A C G T A C T G C G T A G T A C A G T C A C G T A T C G C G T A
A C G T T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:RAMGWSCCTGAMCKSA
GCTGACCTTGAACTN-
 T C A G C G T A G T A C A C T G C G T A A T G C A G T C A G T C A C G T A C T G C G T A G T A C A G T C A C G T A T C G C G T A
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:RAMGWSCCTGAMCKSA
--------TGACCYCT
 T C A G C G T A G T A C A C T G C G T A A T G C A G T C A G T C A C G T A C T G C G T A G T A C A G T C A C G T A T C G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:RAMGWSCCTGAMCKSA----
----NNCNTGACCCCGCTCT
 T C A G C G T A G T A C A C T G C G T A A T G C A G T C A G T C A C G T A C T G C G T A G T A C A G T C A C G T A T C G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:RAMGWSCCTGAMCKSA
NAGGTCANTGACCT--
 T C A G C G T A G T A C A C T G C G T A A T G C A G T C A G T C A C G T A C T G C G T A G T A C A G T C A C G T A T C G C G T A
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T A C G T A C G T