Information for 4-CTCGGCCTGCTCT (Motif 3)

A T G C A G C T A G T C C T A G A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T
Reverse Opposite:
G T C A A C T G C G T A A C T G A G T C C G T A A C T G A C T G A G T C A G T C A C T G C T G A A T C G
p-value:1e-13
log p-value:-3.023e+01
Information Content per bp:1.903
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.3 +/- 16.4bp
Average Position of motif in Background85.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CTCGGCCTGCTCT
GGGGCCGAGGCCTG----
 A C G T A C G T A C G T A C G T A C G T A T G C A G C T A G T C C T A G A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTCGGCCTGCTCT
CTAGGCCT-----
 A T G C A G C T A G T C C T A G A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTCGGCCTGCTCT
GCTCGGSCTC----
 A C G T A T G C A G C T A G T C C T A G A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T
C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTCGGCCTGCTCT
CNAGGCCT-----
 A T G C A G C T A G T C C T A G A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTCGGCCTGCTCT-
--CCCCCTGCTGTG
 A T G C A G C T A G T C C T A G A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTCGGCCTGCTCT
---GGCGCGCT--
 A T G C A G C T A G T C C T A G A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T
A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTCGGCCTGCTCT----
--NNTCCTGCTGTGNNN
 A T G C A G C T A G T C C T A G A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTCGGCCTGCTCT
GCTCCGCCCMCY--
 A C G T A T G C A G C T A G T C C T A G A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T
C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CTCGGCCTGCTCT----
--TNTCCTGCTGTGNNG
 A T G C A G C T A G T C C T A G A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.53
Offset:-10
Orientation:forward strand
Alignment:----------CTCGGCCTGCTCT
GAGCCTGGTACTGWGCCTGR---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A G T C C T A G A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G A C G T A C G T A C G T