Information for 11-TGGCAGCCAA (Motif 15)

A G C T A T C G A T C G G A T C C G T A A C T G G T A C T G A C T C G A C T G A
Reverse Opposite:
G A C T A G C T A C T G A C T G T G A C C G A T C T A G A T G C A T G C T C G A
p-value:1e-7
log p-value:-1.758e+01
Information Content per bp:1.812
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif2.75%
Number of Background Sequences with motif358.3
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets52.4 +/- 25.4bp
Average Position of motif in Background47.6 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:TGGCAGCCAA
----TGCCAA
 A G C T A T C G A T C G G A T C C G T A A C T G G T A C T G A C T C G A C T G A
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCCAA
NTTGGCANN---
 A C G T A C G T A G C T A T C G A T C G G A T C C G T A A C T G G T A C T G A C T C G A C T G A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCCAA
CTTGGCAA----
 A C G T A C G T A G C T A T C G A T C G G A T C C G T A A C T G G T A C T G A C T C G A C T G A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TGGCAGCCAA
--BCAGACWA
 A G C T A T C G A T C G G A T C C G T A A C T G G T A C T G A C T C G A C T G A
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGGCAGCCAA
AGGTGHCAGACA-
 A C G T A C G T A C G T A G C T A T C G A T C G G A T C C G T A A C T G G T A C T G A C T C G A C T G A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCCAA
VBTGWCAGCB--
 A C G T A C G T A G C T A T C G A T C G G A T C C G T A A C T G G T A C T G A C T C G A C T G A
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGCCAA
NNTTGGCANN---
 A C G T A C G T A C G T A G C T A T C G A T C G G A T C C G T A A C T G G T A C T G A C T C G A C T G A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGCCAA
AGGTGNCAGACAG
 A C G T A C G T A C G T A G C T A T C G A T C G G A T C C G T A A C T G G T A C T G A C T C G A C T G A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGCCAA
GGTTGGCAT----
 A C G T A C G T A C G T A G C T A T C G A T C G G A T C C G T A A C T G G T A C T G A C T C G A C T G A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGGCAGCCAA--
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T A G C T A T C G A T C G G A T C C G T A A C T G G T A C T G A C T C G A C T G A A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C