Information for 1-RGYGCCCCCTGSTGGC (Motif 1)

C T A G A T C G G A T C A C T G G T A C A G T C T G A C A G T C A G T C G C A T C T A G T A C G G C A T A C T G C A T G A T G C
Reverse Opposite:
T A C G G T A C A G T C C G T A A T G C G A T C C G T A C T A G C T A G A C T G A C T G A C T G T G A C C T A G A T G C A G T C
p-value:1e-150
log p-value:-3.471e+02
Information Content per bp:1.623
Number of Target Sequences with motif148.0
Percentage of Target Sequences with motif15.63%
Number of Background Sequences with motif307.1
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets51.5 +/- 22.7bp
Average Position of motif in Background50.1 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.97
Offset:-4
Orientation:forward strand
Alignment:----RGYGCCCCCTGSTGGC
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T C T A G A T C G G A T C A C T G G T A C A G T C T G A C A G T C A G T C G C A T C T A G T A C G G C A T A C T G C A T G A T G C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-RGYGCCCCCTGSTGGC--
TAGCGCCCCCTGGTGGCCA
 A C G T C T A G A T C G G A T C A C T G G T A C A G T C T G A C A G T C A G T C G C A T C T A G T A C G G C A T A C T G C A T G A T G C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--RGYGCCCCCTGSTGGC--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T C T A G A T C G G A T C A C T G G T A C A G T C T G A C A G T C A G T C G C A T C T A G T A C G G C A T A C T G C A T G A T G C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:RGYGCCCCCTGSTGGC-
--GGCCYCCTGCTGDGH
 C T A G A T C G G A T C A C T G G T A C A G T C T G A C A G T C A G T C G C A T C T A G T A C G G C A T A C T G C A T G A T G C A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:RGYGCCCCCTGSTGGC
----CCCCCTGCTGTG
 C T A G A T C G G A T C A C T G G T A C A G T C T G A C A G T C A G T C G C A T C T A G T A C G G C A T A C T G C A T G A T G C
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ZIC4/MA0751.1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:RGYGCCCCCTGSTGGC-
--GACCCCCCGCTGTGC
 C T A G A T C G G A T C A C T G G T A C A G T C T G A C A G T C A G T C G C A T C T A G T A C G G C A T A C T G C A T G A T G C A C G T
A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:RGYGCCCCCTGSTGGC
--GACCCCCCGCTGTG
 C T A G A T C G G A T C A C T G G T A C A G T C T G A C A G T C A G T C G C A T C T A G T A C G G C A T A C T G C A T G A T G C
A C G T A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:RGYGCCCCCTGSTGGC-
--GACCCCCCGCTGCGC
 C T A G A T C G G A T C A C T G G T A C A G T C T G A C A G T C A G T C G C A T C T A G T A C G G C A T A C T G C A T G A T G C A C G T
A C G T A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:forward strand
Alignment:RGYGCCCCCTGSTGGC
---GCCATCTGTT---
 C T A G A T C G G A T C A C T G G T A C A G T C T G A C A G T C A G T C G C A T C T A G T A C G G C A T A C T G C A T G A T G C
A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---RGYGCCCCCTGSTGGC
GGTCCCGCCCCCTTCTC--
 A C G T A C G T A C G T C T A G A T C G G A T C A C T G G T A C A G T C T G A C A G T C A G T C G C A T C T A G T A C G G C A T A C T G C A T G A T G C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T