Information for 19-GGAGATGGATGACCGG (Motif 28)

A C T G A C T G C G T A A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C T G C G T A A G T C G T A C A C T G A C T G
Reverse Opposite:
A G T C A G T C A C T G A C T G A C G T A G T C G T C A A C G T A G T C A G T C C G T A A G C T A G T C A C G T A G T C A G T C
p-value:1e-6
log p-value:-1.536e+01
Information Content per bp:1.928
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.6 +/- 21.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGAGATGGATGACCGG
-ATGATKGATGRC---
 A C T G A C T G C G T A A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C T G C G T A A G T C G T A C A C T G A C T G
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGAGATGGATGACCGG
--TGATTRATGGCY--
 A C T G A C T G C G T A A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C T G C G T A A G T C G T A C A C T G A C T G
A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:3
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GGAGATGGATGACCGG
-------CATGAC---
 A C T G A C T G C G T A A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C T G C G T A A G T C G T A C A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GGAGATGGATGACCGG-
-----TGAGTGACAGSC
 A C T G A C T G C G T A A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C T G C G T A A G T C G T A C A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GGAGATGGATGACCGG
-----GGGAGGACNG-
 A C T G A C T G C G T A A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C T G C G T A A G T C G T A C A C T G A C T G
A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:6
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GGAGATGGATGACCGG
NNNNGGGGGAAGANGG-
 A C G T A C T G A C T G C G T A A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C T G C G T A A G T C G T A C A C T G A C T G
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GGAGATGGATGACCGG
--TGATTGATGA----
 A C T G A C T G C G T A A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C T G C G T A A G T C G T A C A C T G A C T G
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GGAGATGGATGACCGG
--TGATTTATGGCC--
 A C T G A C T G C G T A A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C T G C G T A A G T C G T A C A C T G A C T G
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:GGAGATGGATGACCGG
----NTGATTGACAGN
 A C T G A C T G C G T A A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C T G C G T A A G T C G T A C A C T G A C T G
A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

CUX1/MA0754.1/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GGAGATGGATGACCGG
--NTATCGATTA----
 A C T G A C T G C G T A A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C T G C G T A A G T C G T A C A C T G A C T G
A C G T A C G T C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T A C G T A C G T A C G T