Information for 9-AAAACAATGGTAGTGA (Motif 11)

C G T A G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C T G G A C T C T G A C A T G A C G T A C T G C T G A
Reverse Opposite:
A G C T G T A C C G T A G A T C A G C T C G T A A G T C G T A C C G T A A C G T A C G T A C T G C G A T A C G T A C G T G A C T
p-value:1e-10
log p-value:-2.395e+01
Information Content per bp:1.789
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.6 +/- 22.0bp
Average Position of motif in Background72.3 +/- 10.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:AAAACAATGGTAGTGA
-GAACAATGG------
 C G T A G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C T G G A C T C T G A C A T G A C G T A C T G C T G A
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:2
Score:0.78
Offset:2
Orientation:forward strand
Alignment:AAAACAATGGTAGTGA-
--AACAATGGTAGTGTT
 C G T A G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C T G G A C T C T G A C A T G A C G T A C T G C T G A A C G T
A C G T A C G T C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:AAAACAATGGTAGTGA
VRAACAATGG------
 C G T A G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C T G G A C T C T G A C A T G A C G T A C T G C T G A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:4
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--AAAACAATGGTAGTGA
AATGAACAATGGAATT--
 A C G T A C G T C G T A G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C T G G A C T C T G A C A T G A C G T A C T G C T G A
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AAAACAATGGTAGTGA
-RAACAATGGN-----
 C G T A G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C T G G A C T C T G A C A T G A C G T A C T G C T G A
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:6
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----AAAACAATGGTAGTGA
NNTNANAACAATTNNA----
 A C G T A C G T A C G T A C G T C G T A G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C T G G A C T C T G A C A T G A C G T A C T G C T G A
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A A C G T A C G T A C G T A C G T

Sox1/MA0870.1/Jaspar

Match Rank:7
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AAAACAATGGTAGTGA-
--AACAATGNTATTGTT
 C G T A G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C T G G A C T C T G A C A T G A C G T A C T G C T G A A C G T
A C G T A C G T T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:8
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----AAAACAATGGTAGTGA-
AATAAAGAACAATAGAATTTCA
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C T G G A C T C T G A C A T G A C G T A C T G C T G A A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AAAACAATGGTAGTGA
AAAACAATGG------
 C G T A G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C T G G A C T C T G A C A T G A C G T A C T G C T G A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:AAAACAATGGTAGTGA
-GAACAATGGN-----
 C G T A G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C T G G A C T C T G A C A T G A C G T A C T G C T G A
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T