Information for 3-CGCGKCAGGCGGCCTC (Motif 6)

A T G C A C T G T A G C C T A G C A G T T A G C G T C A A T C G T A C G T G A C T A C G A C T G T A G C A T G C A G C T G T A C
Reverse Opposite:
A C T G C T G A A T C G A T C G G T A C A T G C A C T G A T G C A T G C C A G T A T C G G T C A G A T C A T C G T G A C A T C G
p-value:1e-8
log p-value:-1.979e+01
Information Content per bp:1.688
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.24%
Number of Background Sequences with motif212.3
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets49.1 +/- 22.4bp
Average Position of motif in Background48.6 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC4/MA0751.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGCGKCAGGCGGCCTC
NCNCAGCGGGGGGTC--
 A C G T A T G C A C T G T A G C C T A G C A G T T A G C G T C A A T C G T A C G T G A C T A C G A C T G T A G C A T G C A G C T G T A C
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGCGKCAGGCGGCCTC
NCGCAGCGGGGGGTC--
 A C G T A T G C A C T G T A G C C T A G C A G T T A G C G T C A A T C G T A C G T G A C T A C G A C T G T A G C A T G C A G C T G T A C
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGCGKCAGGCGGCCTC
CACAGCGGGGGGTC--
 A T G C A C T G T A G C C T A G C A G T T A G C G T C A A T C G T A C G T G A C T A C G A C T G T A G C A T G C A G C T G T A C
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CGCGKCAGGCGGCCTC
DCHCAGCAGGRGGCC--
 A C G T A T G C A C T G T A G C C T A G C A G T T A G C G T C A A T C G T A C G T G A C T A C G A C T G T A G C A T G C A G C T G T A C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CGCGKCAGGCGGCCTC
--TGTCAGGGGGCG--
 A T G C A C T G T A G C C T A G C A G T T A G C G T C A A T C G T A C G T G A C T A C G A C T G T A G C A T G C A G C T G T A C
A C G T A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CGCGKCAGGCGGCCTC----
GCCASCAGGGGGCGCYVNNG
 A T G C A C T G T A G C C T A G C A G T T A G C G T C A A T C G T A C G T G A C T A C G A C T G T A G C A T G C A G C T G T A C A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0147.1_Max_2/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CGCGKCAGGCGGCCTC
-GTGCCACGCGACTG-
 A T G C A C T G T A G C C T A G C A G T T A G C G T C A A T C G T A C G T G A C T A C G A C T G T A G C A T G C A G C T G T A C
A C G T A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CGCGKCAGGCGGCCTC
--SDGCAGGTGCNS--
 A T G C A C T G T A G C C T A G C A G T T A G C G T C A A T C G T A C G T G A C T A C G A C T G T A G C A T G C A G C T G T A C
A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.51
Offset:9
Orientation:forward strand
Alignment:CGCGKCAGGCGGCCTC-
---------AGGCCTAG
 A T G C A C T G T A G C C T A G C A G T T A G C G T C A A T C G T A C G T G A C T A C G A C T G T A G C A T G C A G C T G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

PB0052.1_Plagl1_1/Jaspar

Match Rank:10
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CGCGKCAGGCGGCCTC---
---NNNGGGGCGCCCCCNN
 A T G C A C T G T A G C C T A G C A G T T A G C G T C A A T C G T A C G T G A C T A C G A C T G T A G C A T G C A G C T G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A