Information for 5-CCCTTGGACT (Motif 11)

A G T C A G T C A G T C A G C T C G A T A C T G A C T G C G T A A G T C A C G T
Reverse Opposite:
T G C A C T A G G C A T A G T C A G T C G C T A C T G A A C T G A C T G A C T G
p-value:1e-7
log p-value:-1.748e+01
Information Content per bp:1.859
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif57.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets48.2 +/- 26.7bp
Average Position of motif in Background49.2 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CCCTTGGACT-
TCACCTCTGGGCAG
 A C G T A C G T A C G T A G T C A G T C A G T C A G C T C G A T A C T G A C T G C G T A A G T C A C G T A C G T
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CCCTTGGACT-
NTGCCCTTGGGCGN
 A C G T A C G T A C G T A G T C A G T C A G T C A G C T C G A T A C T G A C T G C G T A A G T C A C G T A C G T
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTGGACT
TGACCTTGACCT
 A C G T A C G T A G T C A G T C A G T C A G C T C G A T A C T G A C T G C G T A A G T C A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

Nr5a2/MA0505.1/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CCCTTGGACT-
GCTGACCTTGAACTN
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A G C T C G A T A C T G A C T G C G T A A G T C A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTGGACT
TCCCCTGGGGAC
 A C G T A C G T A G T C A G T C A G T C A G C T C G A T A C T G A C T G C G T A A G T C A C G T
A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTGGACT
TGACCTTGAN--
 A C G T A C G T A G T C A G T C A G T C A G C T C G A T A C T G A C T G C G T A A G T C A C G T
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTGGACT
TGACCTTGACCT
 A C G T A C G T A G T C A G T C A G T C A G C T C G A T A C T G A C T G C G T A A G T C A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCCTTGGACT-
NTGCCCTAGGGCAA
 A C G T A C G T A C G T A G T C A G T C A G T C A G C T C G A T A C T G A C T G C G T A A G T C A C G T A C G T
C G T A G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A G C T A

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCCTTGGACT
TGCCCCCGGGCA
 A C G T A C G T A G T C A G T C A G T C A G C T C G A T A C T G A C T G C G T A A G T C A C G T
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCCTTGGACT------
NNATTGGACTTTNGNN
 A G T C A G T C A G T C A G C T C G A T A C T G A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C