Information for 5-CCAAAACHTCCAT (Motif 9)

G T A C A G T C C G T A C T G A C G T A T C G A A T G C G C T A C A G T T A G C G T A C G T C A A G C T
Reverse Opposite:
T C G A C A G T A C T G A C T G G C T A C A G T A T C G A G C T G A C T A G C T A C G T C T A G A C T G
p-value:1e-9
log p-value:-2.273e+01
Information Content per bp:1.697
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif157.7
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets30.5 +/- 28.5bp
Average Position of motif in Background50.5 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCAAAACHTCCAT-
TGCCAAAATAAACANN
 A C G T A C G T G T A C A G T C C G T A C T G A C G T A T C G A A T G C G C T A C A G T T A G C G T A C G T C A A G C T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

RREB1/MA0073.1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCAAAACHTCCAT-----
CCCCAAACCACCCCCCCCCA
 A C G T A C G T G T A C A G T C C G T A C T G A C G T A T C G A A T G C G C T A C A G T T A G C G T A C G T C A A G C T A C G T A C G T A C G T A C G T A C G T
G T A C G T A C G T A C A G T C G T C A G T C A G T C A G T A C A G T C C G T A G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T A G C T G A C

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCAAAACHTCCAT
TGCCAA---------
 A C G T A C G T G T A C A G T C C G T A C T G A C G T A T C G A A T G C G C T A C A G T T A G C G T A C G T C A A G C T
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:4
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CCAAAACHTCCAT
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T G T A C A G T C C G T A C T G A C G T A T C G A A T G C G C T A C A G T T A G C G T A C G T C A A G C T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CCAAAACHTCCAT
CGTGCCAAG--------
 A C G T A C G T A C G T A C G T G T A C A G T C C G T A C T G A C G T A T C G A A T G C G C T A C A G T T A G C G T A C G T C A A G C T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCAAAACHTCCAT--
GAAAAAATTGCAAGG
 G T A C A G T C C G T A C T G A C G T A T C G A A T G C G C T A C A G T T A G C G T A C G T C A A G C T A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CCAAAACHTCCAT
GGTGCCAAGT-------
 A C G T A C G T A C G T A C G T G T A C A G T C C G T A C T G A C G T A T C G A A T G C G C T A C A G T T A G C G T A C G T C A A G C T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CCAAAACHTCCAT
ACAAAGGNBCCT-
 G T A C A G T C C G T A C T G A C G T A T C G A A T G C G C T A C A G T T A G C G T A C G T C A A G C T
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:9
Score:0.50
Offset:7
Orientation:forward strand
Alignment:CCAAAACHTCCAT
-------ATCCAC
 G T A C A G T C C G T A C T G A C G T A T C G A A T G C G C T A C A G T T A G C G T A C G T C A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C

ONECUT3/MA0757.1/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CCAAAACHTCCAT---
--AAAAAATCAATAAT
 G T A C A G T C C G T A C T G A C G T A T C G A A T G C G C T A C A G T T A G C G T A C G T C A A G C T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T