Information for 2-CTCATRCAGG (Motif 6)

A G T C G C A T A G T C C G T A A G C T C T A G A G T C C T G A A C T G C T A G
Reverse Opposite:
A G T C A G T C G A C T A C T G A G T C C T G A C G A T A C T G C G T A A C T G
p-value:1e-10
log p-value:-2.512e+01
Information Content per bp:1.816
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif6.70%
Number of Background Sequences with motif260.5
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets54.2 +/- 25.5bp
Average Position of motif in Background46.8 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GCM1/MA0646.1/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CTCATRCAGG---
--CATGCGGGTAC
 A G T C G C A T A G T C C G T A A G C T C T A G A G T C C T G A A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

GCM2/MA0767.1/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CTCATRCAGG--
--TATGCGGGTA
 A G T C G C A T A G T C C G T A A G C T C T A G A G T C C T G A A C T G C T A G A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A

PB0024.1_Gcm1_1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTCATRCAGG-----
NNNNATGCGGGTNNNN
 A C G T A G T C G C A T A G T C C G T A A G C T C T A G A G T C C T G A A C T G C T A G A C G T A C G T A C G T A C G T A C G T
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCATRCAGG----
TCNCCTGCTGNGNNN
 A C G T A G T C G C A T A G T C C G T A A G C T C T A G A G T C C T G A A C T G C T A G A C G T A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTCATRCAGG--
--CCTGCTGAGH
 A G T C G C A T A G T C C G T A A G C T C T A G A G T C C T G A A C T G C T A G A C G T A C G T
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

SPDEF/MA0686.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTCATRCAGG-
TACATCCGGGT
 A G T C G C A T A G T C C G T A A G C T C T A G A G T C C T G A A C T G C T A G A C G T
G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTCATRCAGG----
TNTCCTGCTGTGNNG
 A C G T A G T C G C A T A G T C C G T A A G C T C T A G A G T C C T G A A C T G C T A G A C G T A C G T A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTCATRCAGG--
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A G T C G C A T A G T C C G T A A G C T C T A G A G T C C T G A A C T G C T A G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTCATRCAGG----
GACCACATTCATACAAT
 A C G T A C G T A C G T A G T C G C A T A G T C C G T A A G C T C T A G A G T C C T G A A C T G C T A G A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTCATRCAGG----
NNTCCTGCTGTGNNN
 A C G T A G T C G C A T A G T C C G T A A G C T C T A G A G T C C T G A A C T G C T A G A C G T A C G T A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C