Information for 3-CCTTTGCAKCTGGCSA (Motif 4)

A G T C A G T C A C G T A C G T A C G T A C T G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C T A C G C G T A
Reverse Opposite:
A C G T A T G C T A C G A G T C A G T C C G T A A C T G G T A C A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C T G
p-value:1e-13
log p-value:-3.078e+01
Information Content per bp:1.915
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 23.4bp
Average Position of motif in Background10.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCTTTGCAKCTGGCSA
----NVCAGCTGBBNN
 A G T C A G T C A C G T A C G T A C G T A C T G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C T A C G C G T A
A C G T A C G T A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCTTTGCAKCTGGCSA-
NNNNAGCAGCTGCTGAN
 A G T C A G T C A C G T A C G T A C G T A C T G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C T A C G C G T A A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:3
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CCTTTGCAKCTGGCSA
-----VCAGCTGBNN-
 A G T C A G T C A C G T A C G T A C G T A C T G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C T A C G C G T A
A C G T A C G T A C G T A C G T A C G T T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCTTTGCAKCTGGCSA-
NNTNCGCACCTGTNGAN
 A G T C A G T C A C G T A C G T A C G T A C T G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C T A C G C G T A A C G T
G C A T C A G T G C A T A G C T G A T C T C A G G T A C C T G A A T G C T A G C A C G T A C T G A C G T C A T G C A T G G T C A A G C T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:5
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CCTTTGCAKCTGGCSA
-----GCAGCTGTNN-
 A G T C A G T C A C G T A C G T A C G T A C T G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C T A C G C G T A
A C G T A C G T A C G T A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CCTTTGCAKCTGGCSA
-----NCAGCTGCTG-
 A G T C A G T C A C G T A C G T A C G T A C T G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C T A C G C G T A
A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CCTTTGCAKCTGGCSA
----ANCAGCTG----
 A G T C A G T C A C G T A C G T A C G T A C T G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C T A C G C G T A
A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CCTTTGCAKCTGGCSA
---NNGCAGCTGTC--
 A G T C A G T C A C G T A C G T A C G T A C T G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C T A C G C G T A
A C G T A C G T A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCTTTGCAKCTGGCSA
-ATTTGCATAT-----
 A G T C A G T C A C G T A C G T A C G T A C T G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C T A C G C G T A
A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T A C G T A C G T A C G T A C G T A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCTTTGCAKCTGGCSA
--VNAVCAGCTGGC--
 A G T C A G T C A C G T A C G T A C G T A C T G G T A C C G T A A C T G G T A C A C G T A C T G A C T G A G T C T A C G C G T A
A C G T A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T A C G T