Information for 7-CCCTTAAGAW (Motif 10)

A G T C A G T C G T A C A C G T C G A T C G T A C G T A C T A G C G T A C G A T
Reverse Opposite:
G C T A C G A T A G T C G C A T A C G T G C T A C G T A A C T G A C T G C T A G
p-value:1e-8
log p-value:-1.979e+01
Information Content per bp:1.770
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif47.5
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets55.0 +/- 29.6bp
Average Position of motif in Background55.4 +/- 23.1bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTAAGAW
BCMATTAG---
 A C G T A G T C A G T C G T A C A C G T C G A T C G T A C G T A C T A G C G T A C G A T
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCCTTAAGAW
ACCACTTAA---
 A C G T A C G T A G T C A G T C G T A C A C G T C G A T C G T A C G T A C T A G C G T A C G A T
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:3
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CCCTTAAGAW-
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T A C A C G T C G A T C G T A C G T A C T A G C G T A C G A T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CCCTTAAGAW-
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T A C A C G T C G A T C G T A C G T A C T A G C G T A C G A T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PH0088.1_Isl2/Jaspar

Match Rank:5
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CCCTTAAGAW
CAAAATCAATTAATTT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T A C A C G T C G A T C G T A C G T A C T A G C G T A C G A T
G T A C G C T A G T C A G T C A G T C A A G C T G A T C G T C A G T C A G A C T G A C T C G T A C T G A C A G T C G A T G A C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCCTTAAGAW
ACCACTTAA---
 A C G T A C G T A G T C A G T C G T A C A C G T C G A T C G T A C G T A C T A G C G T A C G A T
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCCTTAAGAW
YCATTAMC--
 A G T C A G T C G T A C A C G T C G A T C G T A C G T A C T A G C G T A C G A T
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CCCTTAAGAW-
TAAGCCACTTAACATT
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T A C A C G T C G A T C G T A C G T A C T A G C G T A C G A T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

ISL2/MA0914.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCCTTAAGAW
GCACTTAA---
 A C G T A G T C A G T C G T A C A C G T C G A T C G T A C G T A C T A G C G T A C G A T
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTAAGAW
NNCAATTANN--
 A C G T A C G T A G T C A G T C G T A C A C G T C G A T C G T A C G T A C T A G C G T A C G A T
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T