Information for 5-TGATTAAAATCATGTG (Motif 9)

C G A T A C T G T C G A A C G T A C G T C G T A C T G A C G T A C G T A A G C T A T G C G C T A A C G T A T C G A C G T C A T G
Reverse Opposite:
G A T C G T C A A T G C T C G A C A G T A T C G T C G A G C A T A C G T A G C T A C G T T C G A G T C A A C G T A G T C C G T A
p-value:1e-10
log p-value:-2.447e+01
Information Content per bp:1.694
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif15.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets63.9 +/- 24.1bp
Average Position of motif in Background52.0 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGATTAAAATCATGTG-
YTAATTRAWWCCAGATGT
 A C G T C G A T A C T G T C G A A C G T A C G T C G T A C T G A C G T A C G T A A G C T A T G C G C T A A C G T A T C G A C G T C A T G A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:2
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TGATTAAAATCATGTG
GGGTTTAATTAAAATTC----
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G T C G A A C G T A C G T C G T A C T G A C G T A C G T A A G C T A T G C G C T A A C G T A T C G A C G T C A T G
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C A C G T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TGATTAAAATCATGTG
--ATTAAA--------
 C G A T A C T G T C G A A C G T A C G T C G T A C T G A C G T A C G T A A G C T A T G C G C T A A C G T A T C G A C G T C A T G
A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFEC/MA0871.1/Jaspar

Match Rank:4
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:TGATTAAAATCATGTG--
--------NTCACGTGAT
 C G A T A C T G T C G A A C G T A C G T C G T A C T G A C G T A C G T A A G C T A T G C G C T A A C G T A T C G A C G T C A T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T A G T C C G T A A G T C T C A G C G A T A C T G G T C A A G C T

USF2/MA0526.1/Jaspar

Match Rank:5
Score:0.56
Offset:8
Orientation:forward strand
Alignment:TGATTAAAATCATGTG---
--------GTCATGTGACC
 C G A T A C T G T C G A A C G T A C G T C G T A C T G A C G T A C G T A A G C T A T G C G C T A A C G T A T C G A C G T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C

PH0101.1_Lmx1b/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TGATTAAAATCATGTG
NNAATTAATTAAAAANN----
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G T C G A A C G T A C G T C G T A C T G A C G T A C G T A A G C T A T G C G C T A A C G T A T C G A C G T C A T G
T G A C C T G A G C T A C G T A A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G T A G C T A G C T A G A T C A G C T A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGATTAAAATCATGTG
NTAATTAATAT------
 A C G T C G A T A C T G T C G A A C G T A C G T C G T A C T G A C G T A C G T A A G C T A T G C G C T A A C G T A T C G A C G T C A T G
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0100.1_Lmx1a/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TGATTAAAATCATGTG
CGAATTAATTAAAAACC----
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G T C G A A C G T A C G T C G T A C T G A C G T A C G T A A G C T A T G C G C T A A C G T A T C G A C G T C A T G
T A G C T A C G G C T A C G T A G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G T A G C T A G C T A G A T C A G T C A C G T A C G T A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:9
Score:0.55
Offset:9
Orientation:forward strand
Alignment:TGATTAAAATCATGTG---
---------CCATGTGCTT
 C G A T A C T G T C G A A C G T A C G T C G T A C T G A C G T A C G T A A G C T A T G C G C T A A C G T A T C G A C G T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C A G T C C G T A A G C T A C T G A C G T A C T G A T G C G A C T A G C T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.55
Offset:8
Orientation:forward strand
Alignment:TGATTAAAATCATGTG--
--------RTCATGTGAC
 C G A T A C T G T C G A A C G T A C G T C G T A C T G A C G T A C G T A A G C T A T G C G C T A A C G T A T C G A C G T C A T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C