Information for 5-NGCMGGCAGACAG (Motif 7)

A C T G A C T G A G T C G T A C C T A G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
Reverse Opposite:
A G T C A G C T A C T G G A C T A G T C A C G T A C T G G T A C A G T C A C T G A C T G A G T C A G T C
p-value:1e-6
log p-value:-1.424e+01
Information Content per bp:1.786
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif7.41%
Number of Background Sequences with motif59.0
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets48.6 +/- 14.0bp
Average Position of motif in Background47.3 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:NGCMGGCAGACAG
-----CCAGACAG
 A C T G A C T G A G T C G T A C C T A G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:NGCMGGCAGACAG--
-----CCAGACRSVB
 A C T G A C T G A G T C G T A C C T A G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:NGCMGGCAGACAG
AGGTGNCAGACAG
 A C T G A C T G A G T C G T A C C T A G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-NGCMGGCAGACAG
TGGCAGNCTGCCAG
 A C G T A C T G A C T G A G T C G T A C C T A G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:NGCMGGCAGACAG
-----BCAGACWA
 A C T G A C T G A G T C G T A C C T A G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:NGCMGGCAGACAG---
-SCAGYCADGCATGAC
 A C T G A C T G A G T C G T A C C T A G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:NGCMGGCAGACAG
AGGTGHCAGACA-
 A C T G A C T G A G T C G T A C C T A G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:NGCMGGCAGACAG----
CAAATCCAGACATCACA
 A C T G A C T G A G T C G T A C C T A G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:NGCMGGCAGACAG--------
-GCCASCAGGGGGCGCYVNNG
 A C T G A C T G A G T C G T A C C T A G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:NGCMGGCAGACAG
GSCTGTCACTCA-
 A C T G A C T G A G T C G T A C C T A G A C T G A G T C C G T A A C T G C T G A G T A C C T G A A C T G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T