Information for 3-TGCTCTCTGSCCWGAG (Motif 4)

C G A T T A C G A G T C A C G T G T A C G C A T A G T C A C G T A C T G T A G C A G T C G T A C C G T A A C T G C G T A C A T G
Reverse Opposite:
G T A C C G A T G T A C G C A T A C T G A C T G A T C G A G T C C G T A C T A G C G T A C A T G T C G A C T A G A T G C G C T A
p-value:1e-11
log p-value:-2.540e+01
Information Content per bp:1.723
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.7 +/- 28.9bp
Average Position of motif in Background55.5 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.65
Offset:6
Orientation:forward strand
Alignment:TGCTCTCTGSCCWGAG
------CTGCCCGCA-
 C G A T T A C G A G T C A C G T G T A C G C A T A G T C A C G T A C T G T A G C A G T C G T A C C G T A A C T G C G T A C A T G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGCTCTCTGSCCWGAG
TGACCTTTGCCCTA--
 C G A T T A C G A G T C A C G T G T A C G C A T A G T C A C G T A C T G T A G C A G T C G T A C C G T A A C T G C G T A C A T G
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCTCTCTGSCCWGAG
TGACCTTTGCCCTAN-
 C G A T T A C G A G T C A C G T G T A C G C A T A G T C A C G T A C T G T A G C A G T C G T A C C G T A A C T G C G T A C A T G
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGCTCTCTGSCCWGAG
TGACCTTTGACCTC--
 C G A T T A C G A G T C A C G T G T A C G C A T A G T C A C G T A C T G T A G C A G T C G T A C C G T A A C T G C G T A C A T G
G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGCTCTCTGSCCWGAG
TGACCTTTGCCCCA--
 C G A T T A C G A G T C A C G T G T A C G C A T A G T C A C G T A C T G T A G C A G T C G T A C C G T A A C T G C G T A C A T G
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGCTCTCTGSCCWGAG
TGACCTCTGACCCCN-
 C G A T T A C G A G T C A C G T G T A C G C A T A G T C A C G T A C T G T A G C A G T C G T A C C G T A A C T G C G T A C A T G
G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGCTCTCTGSCCWGAG
TGGACTTTGNNCTNTG
 C G A T T A C G A G T C A C G T G T A C G C A T A G T C A C G T A C T G T A G C A G T C G T A C C G T A A C T G C G T A C A T G
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:8
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:TGCTCTCTGSCCWGAG----
------NTGCCCANNGGTNA
 C G A T T A C G A G T C A C G T G T A C G C A T A G T C A C G T A C T G T A G C A G T C G T A C C G T A A C T G C G T A C A T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:TGCTCTCTGSCCWGAG
-------TGACCTYA-
 C G A T T A C G A G T C A C G T G T A C G C A T A G T C A C G T A C T G T A G C A G T C G T A C C G T A A C T G C G T A C A T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:TGCTCTCTGSCCWGAG-
-------TGCCCAGNHW
 C G A T T A C G A G T C A C G T G T A C G C A T A G T C A C G T A C T G T A G C A G T C G T A C C G T A A C T G C G T A C A T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A