Information for 2-CCTGAGAAATCTRTGG (Motif 3)

A T G C G T A C A C G T A C T G C G T A T A C G C G T A C G T A C G T A C G A T G A T C A C G T C T G A A C G T A C T G A T C G
Reverse Opposite:
A T G C A G T C G T C A G A C T C G T A C T A G C G T A A C G T C G A T G C A T A G T C C G A T G T A C C G T A A C T G A T C G
p-value:1e-11
log p-value:-2.636e+01
Information Content per bp:1.717
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif13.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.1 +/- 21.6bp
Average Position of motif in Background51.7 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCTGAGAAATCTRTGG
ACCGTGACTAATTNN---
 A C G T A C G T A T G C G T A C A C G T A C T G C G T A T A C G C G T A C G T A C G T A C G A T G A T C A C G T C T G A A C G T A C T G A T C G
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CCTGAGAAATCTRTGG
------AAATCACTGC
 A T G C G T A C A C G T A C T G C G T A T A C G C G T A C G T A C G T A C G A T G A T C A C G T C T G A A C G T A C T G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCTGAGAAATCTRTGG
CSTGGGAAAD------
 A T G C G T A C A C G T A C T G C G T A T A C G C G T A C G T A C G T A C G A T G A T C A C G T C T G A A C G T A C T G A T C G
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCTGAGAAATCTRTGG-
NNNCTGATATCTCNNNN
 A T G C G T A C A C G T A C T G C G T A T A C G C G T A C G T A C G T A C G A T G A T C A C G T C T G A A C G T A C T G A T C G A C G T
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

Gfi1/MA0038.1/Jaspar

Match Rank:5
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CCTGAGAAATCTRTGG
-----CAAATCACTG-
 A T G C G T A C A C G T A C T G C G T A T A C G C G T A C G T A C G T A C G A T G A T C A C G T C T G A A C G T A C T G A T C G
A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:6
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CCTGAGAAATCTRTGG-
------AAATCACAGCA
 A T G C G T A C A C G T A C T G C G T A T A C G C G T A C G T A C G T A C G A T G A T C A C G T C T G A A C G T A C T G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

HOXA5/MA0158.1/Jaspar

Match Rank:7
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:CCTGAGAAATCTRTGG
-------AATTAGTG-
 A T G C G T A C A C G T A C T G C G T A T A C G C G T A C G T A C G T A C G A T G A T C A C G T C T G A A C G T A C T G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CCTGAGAAATCTRTGG
GCTGTG----------
 A T G C G T A C A C G T A C T G C G T A T A C G C G T A C G T A C G T A C G A T G A T C A C G T C T G A A C G T A C T G A T C G
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CCTGAGAAATCTRTGG
-ATGAATWATTCATGA
 A T G C G T A C A C G T A C T G C G T A T A C G C G T A C G T A C G T A C G A T G A T C A C G T C T G A A C G T A C T G A T C G
A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

POU4F1/MA0790.1/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CCTGAGAAATCTRTGG
-ATGAATAATTAATG-
 A T G C G T A C A C G T A C T G C G T A T A C G C G T A C G T A C G T A C G A T G A T C A C G T C T G A A C G T A C T G A T C G
A C G T T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G A C G T