Information for 6-CCTAGACCTA (Motif 13)

T A G C G T A C G C A T C T G A C T A G C T G A G T A C G A T C G C A T C T G A
Reverse Opposite:
G A C T C G T A C T A G A C T G G A C T G A T C G A C T C G T A C A T G A T C G
p-value:1e-8
log p-value:-1.899e+01
Information Content per bp:1.669
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif6.27%
Number of Background Sequences with motif969.5
Percentage of Background Sequences with motif1.96%
Average Position of motif in Targets53.1 +/- 25.9bp
Average Position of motif in Background50.8 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CCTAGACCTA
TGACCTTGACCT-
 A C G T A C G T A C G T T A G C G T A C G C A T C T G A C T A G C T G A G T A C G A T C G C A T C T G A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CCTAGACCTA
TGACCTTGACCT-
 A C G T A C G T A C G T T A G C G T A C G C A T C T G A C T A G C T G A G T A C G A T C G C A T C T G A
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCTAGACCTA
-CTAGGCCT-
 T A G C G T A C G C A T C T G A C T A G C T G A G T A C G A T C G C A T C T G A
A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCTAGACCTA
-CNAGGCCT-
 T A G C G T A C G C A T C T G A C T A G C T G A G T A C G A T C G C A T C T G A
A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCTAGACCTA
GGGGCCGAGGCCTG
 A C G T A C G T A C G T A C G T T A G C G T A C G C A T C T G A C T A G C T G A G T A C G A T C G C A T C T G A
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTAGACCTA------
--TTGACCTANTTATN
 T A G C G T A C G C A T C T G A C T A G C T G A G T A C G A T C G C A T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

PB0117.1_Eomes_2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCTAGACCTA---
NNGGCGACACCTCNNN
 A C G T A C G T A C G T T A G C G T A C G C A T C T G A C T A G C T G A G T A C G A T C G C A T C T G A A C G T A C G T A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

SMAD3/MA0795.1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCTAGACCTA
CGTCTAGACA--
 A C G T A C G T T A G C G T A C G C A T C T G A C T A G C T G A G T A C G A T C G C A T C T G A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCTAGACCTA--
NGNTCTAGAACCNGV
 A C G T A C G T A C G T T A G C G T A C G C A T C T G A C T A G C T G A G T A C G A T C G C A T C T G A A C G T A C G T
C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCTAGACCTA---
---TGACCTARTT
 T A G C G T A C G C A T C T G A C T A G C T G A G T A C G A T C G C A T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T