Information for 4-ATGATATTGT (Motif 11)

C G T A A C G T T A C G G T C A G C A T G T C A C G A T A C G T A C T G C G A T
Reverse Opposite:
C G T A A G T C C G T A C G T A C A G T C G T A C A G T A T G C C G T A A C G T
p-value:1e-8
log p-value:-1.945e+01
Information Content per bp:1.832
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif3.32%
Number of Background Sequences with motif277.2
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets47.8 +/- 30.1bp
Average Position of motif in Background48.8 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox1/MA0870.1/Jaspar

Match Rank:1
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----ATGATATTGT-
AACAATGNTATTGTT
 A C G T A C G T A C G T A C G T C G T A A C G T T A C G G T C A G C A T G T C A C G A T A C G T A C T G C G A T A C G T
T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:ATGATATTGT-
--CTCATTGTC
 C G T A A C G T T A C G G T C A G C A T G T C A C G A T A C G T A C T G C G A T A C G T
A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

PB0122.1_Foxk1_2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ATGATATTGT---
NNNTGTTGTTGTTNG
 A C G T A C G T C G T A A C G T T A C G G T C A G C A T G T C A C G A T A C G T A C T G C G A T A C G T A C G T A C G T
C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G

MF0011.1_HMG_class/Jaspar

Match Rank:4
Score:0.67
Offset:5
Orientation:forward strand
Alignment:ATGATATTGT-
-----ATTGTT
 C G T A A C G T T A C G G T C A G C A T G T C A C G A T A C G T A C T G C G A T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T

PB0072.1_Sox5_1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ATGATATTGT------
NNTTTATTGTTCTNNN
 C G T A A C G T T A C G G T C A G C A T G T C A C G A T A C G T A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:ATGATATTGT------
AANTTATTGTTCTNNA
 C G T A A C G T T A C G G T C A G C A T G T C A C G A T A C G T A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

PB0073.1_Sox7_1/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----ATGATATTGT--------
TNNANNTCTATTGTTNTNNANN
 A C G T A C G T A C G T A C G T C G T A A C G T T A C G G T C A G C A T G T C A C G A T A C G T A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T

SRY/MA0084.1/Jaspar

Match Rank:8
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:ATGATATTGT----
-----ATTGTTTAN
 C G T A A C G T T A C G G T C A G C A T G T C A C G A T A C G T A C T G C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

Sox5/MA0087.1/Jaspar

Match Rank:9
Score:0.65
Offset:5
Orientation:forward strand
Alignment:ATGATATTGT--
-----ATTGTTA
 C G T A A C G T T A C G G T C A G C A T G T C A C G A T A C G T A C T G C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATGATATTGT------
ANNTCTATTGTTCNNNA
 A C G T C G T A A C G T T A C G G T C A G C A T G T C A C G A T A C G T A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A