Information for 3-AAGTGACAAGGGCAVT (Motif 6)

C G T A C G T A A C T G C G A T A T C G G T C A A G T C G T C A C G T A A C T G A C T G A T C G A T G C C G T A T A G C A C G T
Reverse Opposite:
C G T A A C T G A C G T A T C G A T G C A G T C A G T C C G A T A C G T A C T G A C G T T A G C C G T A G T A C C G A T A C G T
p-value:1e-11
log p-value:-2.601e+01
Information Content per bp:1.807
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.4 +/- 17.6bp
Average Position of motif in Background31.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AAGTGACAAGGGCAVT
NNAGGGACAAGGGCNC-
 A C G T C G T A C G T A A C T G C G A T A T C G G T C A A G T C G T C A C G T A A C T G A C T G A T C G A T G C C G T A T A G C A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C A C G T

RARA/MA0729.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AAGTGACAAGGGCAVT-
GAGGTCAAAAGGTCAATG
 A C G T C G T A C G T A A C T G C G A T A T C G G T C A A G T C G T C A C G T A A C T G A C T G A T C G A T G C C G T A T A G C A C G T A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.59
Offset:6
Orientation:forward strand
Alignment:AAGTGACAAGGGCAVT
------CAAGGHCANV
 C G T A C G T A A C T G C G A T A T C G G T C A A G T C G T C A C G T A A C T G A C T G A T C G A T G C C G T A T A G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AAGTGACAAGGGCAVT
----BTCAAGGTCA--
 C G T A C G T A A C T G C G A T A T C G G T C A A G T C G T C A C G T A A C T G A C T G A T C G A T G C C G T A T A G C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

Rarb/MA0857.1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAGTGACAAGGGCAVT
AAAGGTCAAAAGGTCA--
 A C G T A C G T C G T A C G T A A C T G C G A T A T C G G T C A A G T C G T C A C G T A A C T G A C T G A T C G A T G C C G T A T A G C A C G T
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AAGTGACAAGGGCAVT
----NTCAAGGTCA--
 C G T A C G T A A C T G C G A T A T C G G T C A A G T C G T C A C G T A A C T G A C T G A T C G A T G C C G T A T A G C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAGTGACAAGGGCAVT
GAGGTCAAAAGGTCA--
 A C G T C G T A C G T A A C T G C G A T A T C G G T C A A G T C G T C A C G T A A C T G A C T G A T C G A T G C C G T A T A G C A C G T
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T A C G T

USF2/MA0526.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AAGTGACAAGGGCAVT
-GGTCACATGAC----
 C G T A C G T A A C T G C G A T A T C G G T C A A G T C G T C A C G T A A C T G A C T G A T C G A T G C C G T A T A G C A C G T
A C G T C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C A C G T A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AAGTGACAAGGGCAVT
AAGGTCAAAAGGTCAA-
 A C G T C G T A C G T A A C T G C G A T A T C G G T C A A G T C G T C A C G T A A C T G A C T G A T C G A T G C C G T A T A G C A C G T
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AAGTGACAAGGGCAVT
--GTCACATGAY----
 C G T A C G T A A C T G C G A T A T C G G T C A A G T C G T C A C G T A A C T G A C T G A T C G A T G C C G T A T A G C A C G T
A C G T A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C A C G T A C G T A C G T A C G T