Information for 3-CYCTTTGTARAGG (Motif 5)

A G T C A G C T A G T C A C G T A C G T A C G T A C T G C G A T C G T A C T A G C G T A C T A G A C T G
Reverse Opposite:
A G T C A G T C A C G T A G T C A C G T C G T A A G T C C G T A C G T A C G T A C T A G C T G A A C T G
p-value:1e-11
log p-value:-2.601e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.6 +/- 21.7bp
Average Position of motif in Background39.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CYCTTTGTARAGG
--CTTTGT-----
 A G T C A G C T A G T C A C G T A C G T A C G T A C T G C G A T C G T A C T A G C G T A C T A G A C T G
A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CYCTTTGTARAGG
AGGVNCCTTTGT-----
 A C G T A C G T A C G T A C G T A G T C A G C T A G T C A C G T A C G T A C G T A C T G C G A T C G T A C T A G C G T A C T A G A C T G
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CYCTTTGTARAGG
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A G T C A G C T A G T C A C G T A C G T A C G T A C T G C G A T C G T A C T A G C G T A C T A G A C T G
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CYCTTTGTARAGG
-CCWTTGTY----
 A G T C A G C T A G T C A C G T A C G T A C G T A C T G C G A T C G T A C T A G C G T A C T A G A C T G
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CYCTTTGTARAGG
-CCWTTGTYYB--
 A G T C A G C T A G T C A C G T A C G T A C G T A C T G C G A T C G T A C T A G C G T A C T A G A C T G
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CYCTTTGTARAGG
-CCTTTGTT----
 A G T C A G C T A G T C A C G T A C G T A C G T A C T G C G A T C G T A C T A G C G T A C T A G A C T G
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CYCTTTGTARAGG
TCTATTTTTAGA--
 A C G T A G T C A G C T A G T C A C G T A C G T A C G T A C T G C G A T C G T A C T A G C G T A C T A G A C T G
C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A A C G T A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CYCTTTGTARAGG
TCTATTTATAGN--
 A C G T A G T C A G C T A G T C A C G T A C G T A C G T A C T G C G A T C G T A C T A G C G T A C T A G A C T G
C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CYCTTTGTARAGG-
--CCTTTTATAGNC
 A G T C A G C T A G T C A C G T A C G T A C G T A C T G C G A T C G T A C T A G C G T A C T A G A C T G A C G T
A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CYCTTTGTARAGG
-YCTTTGTTCC--
 A G T C A G C T A G T C A C G T A C G T A C G T A C T G C G A T C G T A C T A G C G T A C T A G A C T G
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T