Information for 2-CCTGGCACCCAGT (Motif 3)

A T G C A G T C A C G T C A T G A C T G A G T C C G T A A G T C A G T C A G T C C G T A A T C G C G A T
Reverse Opposite:
C G T A A T G C A C G T A C T G A C T G A C T G A C G T A C T G A G T C G A T C C G T A A C T G A T C G
p-value:1e-12
log p-value:-2.791e+01
Information Content per bp:1.905
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.8 +/- 21.5bp
Average Position of motif in Background51.3 +/- 2.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCTGGCACCCAGT
GSCTGTCACTCA--
 A C G T A T G C A G T C A C G T C A T G A C T G A G T C C G T A A G T C A G T C A G T C C G T A A T C G C G A T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCTGGCACCCAGT
NCTGTCAATCAN-
 A T G C A G T C A C G T C A T G A C T G A G T C C G T A A G T C A G T C A G T C C G T A A T C G C G A T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CCTGGCACCCAGT
TGTTKCCTAGCAACM---
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T C A T G A C T G A G T C C G T A A G T C A G T C A G T C C G T A A T C G C G A T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCTGGCACCCAGT
CTTGGCAA-----
 A T G C A G T C A C G T C A T G A C T G A G T C C G T A A G T C A G T C A G T C C G T A A T C G C G A T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCTGGCACCCAGT
SCCTAGCAACAG--
 A C G T A T G C A G T C A C G T C A T G A C T G A G T C C G T A A G T C A G T C A G T C C G T A A T C G C G A T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------CCTGGCACCCAGT---
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T C A T G A C T G A G T C C G T A A G T C A G T C A G T C C G T A A T C G C G A T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCTGGCACCCAGT
TACCATAGCAACGGT-
 A C G T A C G T A C G T A T G C A G T C A C G T C A T G A C T G A G T C C G T A A G T C A G T C A G T C C G T A A T C G C G A T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTGGCACCCAGT
SCTGTCAVTCAV-
 A T G C A G T C A C G T C A T G A C T G A G T C C G T A A G T C A G T C A G T C C G T A A T C G C G A T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCTGGCACCCAGT
--TGACACCT---
 A T G C A G T C A C G T C A T G A C T G A G T C C G T A A G T C A G T C A G T C C G T A A T C G C G A T
A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCTGGCACCCAGT
CTGTCTGTCACCT---
 A C G T A C G T A C G T A T G C A G T C A C G T C A T G A C T G A G T C C G T A A G T C A G T C A G T C C G T A A T C G C G A T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T