Information for 1-RCAGAACAAAAAG (Motif 2)

C T G A A G T C C G T A A C T G T G C A C G T A A G T C C G T A C T G A C G T A C T G A C G T A A C T G
Reverse Opposite:
A G T C A C G T A G C T A C G T A G C T A C G T A C T G A C G T A C G T G T A C A C G T A C T G A G C T
p-value:1e-12
log p-value:-2.858e+01
Information Content per bp:1.858
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.6 +/- 30.8bp
Average Position of motif in Background64.7 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0071.1_Sox4_1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RCAGAACAAAAAG---
AGAAGAACAAAGGACTA
 A C G T C T G A A G T C C G T A A C T G T G C A C G T A A G T C C G T A C T G A C G T A C T G A C G T A A C T G A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:RCAGAACAAAAAG
--AAAACAAAGG-
 C T G A A G T C C G T A A C T G T G C A C G T A A G T C C G T A C T G A C G T A C T G A C G T A A C T G
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RCAGAACAAAAAG---
ATAAGAACAAAGGACTA
 A C G T C T G A A G T C C G T A A C T G T G C A C G T A A G T C C G T A C T G A C G T A C T G A C G T A A C T G A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:RCAGAACAAAAAG
--GGAACAAAGR-
 C T G A A G T C C G T A A C T G T G C A C G T A A G T C C G T A C T G A C G T A C T G A C G T A A C T G
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----RCAGAACAAAAAG
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T C T G A A G T C C G T A A C T G T G C A C G T A A G T C C G T A C T G A C G T A C T G A C G T A A C T G
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-RCAGAACAAAAAG-
ARGAGGMCAAAATGW
 A C G T C T G A A G T C C G T A A C T G T G C A C G T A A G T C C G T A C T G A C G T A C T G A C G T A A C T G A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

PB0123.1_Foxl1_2/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---RCAGAACAAAAAG
ATATCAAAACAAAACA
 A C G T A C G T A C G T C T G A A G T C C G T A A C T G T G C A C G T A A G T C C G T A C T G A C G T A C T G A C G T A A C T G
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:RCAGAACAAAAAG----
-AAACAGACAAAGGAAT
 C T G A A G T C C G T A A C T G T G C A C G T A A G T C C G T A C T G A C G T A C T G A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RCAGAACAAAAAG--
CGAAGCACACAAAATA
 A C G T C T G A A G T C C G T A A C T G T G C A C G T A A G T C C G T A C T G A C G T A C T G A C G T A A C T G A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0062.1_Sox12_1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--RCAGAACAAAAAG
NTTNAGAACAATTA-
 A C G T A C G T C T G A A G T C C G T A A C T G T G C A C G T A A G T C C G T A C T G A C G T A C T G A C G T A A C T G
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T