Information for 5-CGTGACCTGTATC (Motif 9)

G T A C C T A G C G A T A C T G C G T A A T G C A G T C A C G T C T A G A C G T C T G A A C G T A G T C
Reverse Opposite:
A C T G C G T A A G C T T C G A A G T C C G T A A C T G A T C G G C A T A G T C C G T A A G T C A C T G
p-value:1e-11
log p-value:-2.603e+01
Information Content per bp:1.820
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.8 +/- 21.8bp
Average Position of motif in Background26.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTGTATC
--TGACCTTGAT-
 G T A C C T A G C G A T A C T G C G T A A T G C A G T C A C G T C T A G A C G T C T G A A C G T A G T C
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CGTGACCTGTATC
-GTGACCTT----
 G T A C C T A G C G A T A C T G C G T A A T G C A G T C A C G T C T A G A C G T C T G A A C G T A G T C
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTGTATC
--TGACCTARTT-
 G T A C C T A G C G A T A C T G C G T A A T G C A G T C A C G T C T A G A C G T C T G A A C G T A G T C
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTGTATC
--TGACCT-----
 G T A C C T A G C G A T A C T G C G T A A T G C A G T C A C G T C T A G A C G T C T G A A C G T A G T C
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGTGACCTGTATC
-NTGACCTTGA--
 G T A C C T A G C G A T A C T G C G T A A T G C A G T C A C G T C T A G A C G T C T G A A C G T A G T C
A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTGTATC
--TGACCTYA---
 G T A C C T A G C G A T A C T G C G T A A T G C A G T C A C G T C T A G A C G T C T G A A C G T A G T C
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGTGACCTGTATC--
-TTGACCTANTTATN
 G T A C C T A G C G A T A C T G C G T A A T G C A G T C A C G T C T A G A C G T C T G A A C G T A G T C A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

Esrrg/MA0643.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CGTGACCTGTATC
-ATGACCTTGA--
 G T A C C T A G C G A T A C T G C G T A A T G C A G T C A C G T C T A G A C G T C T G A A C G T A G T C
A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CGTGACCTGTATC-
NNNGTGACCTTTGNNN
 A C G T A C G T G T A C C T A G C G A T A C T G C G T A A T G C A G T C A C G T C T A G A C G T C T G A A C G T A G T C A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CGTGACCTGTATC
CNNTTGACCTTTG--
 A C G T A C G T G T A C C T A G C G A T A C T G C G T A A T G C A G T C A C G T C T A G A C G T C T G A A C G T A G T C
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T