Information for 11-CCCCCGCAGGMCG (Motif 21)

A T G C A G T C G A T C A T G C A T G C A T C G A T G C C T G A C T A G C T A G T G C A A G T C A T C G
Reverse Opposite:
A T G C C T A G A C G T A G T C A G T C G A C T A T C G T A G C T A C G T A C G C T A G C T A G A T C G
p-value:1e-9
log p-value:-2.083e+01
Information Content per bp:1.694
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.82%
Number of Background Sequences with motif243.8
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets51.1 +/- 25.0bp
Average Position of motif in Background49.1 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PLAG1/MA0163.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCCCCGCAGGMCG-
CCCCCTTGGGCCCC
 A T G C A G T C G A T C A T G C A T G C A T C G A T G C C T G A C T A G C T A G T G C A A G T C A T C G A C G T
A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCCCCGCAGGMCG--
DCHCAGCAGGRGGCC
 A T G C A G T C G A T C A T G C A T G C A T C G A T G C C T G A C T A G C T A G T G C A A G T C A T C G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0101.1_Zic1_1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCCCCGCAGGMCG
CCCCCCCGGGGGNN-
 A C G T A C G T A T G C A G T C G A T C A T G C A T G C A T C G A T G C C T G A C T A G C T A G T G C A A G T C A T C G
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCCCCGCAGGMCG
-CACAGCAGGGGG
 A T G C A G T C G A T C A T G C A T G C A T C G A T G C C T G A C T A G C T A G T G C A A G T C A T C G
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCCCCGCAGGMCG
GACCCCCCGCTGTGC-
 A C G T A C G T A C G T A T G C A G T C G A T C A T G C A T G C A T C G A T G C C T G A C T A G C T A G T G C A A G T C A T C G
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCCCCGCAGGMCG-
--SCCTSAGGSCAW
 A T G C A G T C G A T C A T G C A T G C A T C G A T G C C T G A C T A G C T A G T G C A A G T C A T C G A C G T
A C G T A C G T A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T

PB0102.1_Zic2_1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCCCCGCAGGMCG
ACCCCCCCGGGGGGN-
 A C G T A C G T A C G T A T G C A G T C G A T C A T G C A T G C A T C G A T G C C T G A C T A G C T A G T G C A A G T C A T C G
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G A C G T

PB0010.1_Egr1_1/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCCCCGCAGGMCG
TCCGCCCCCGCATT---
 A C G T A C G T A C G T A C G T A T G C A G T C G A T C A T G C A T G C A T C G A T G C C T G A C T A G C T A G T G C A A G T C A T C G
G A C T G T A C G A T C T C A G A G T C A T G C A G T C G T A C G A T C A C T G A G T C C G T A G A C T A C G T A C G T A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCCCCGCAGGMCG
TGCCCCCGGGCA-
 A T G C A G T C G A T C A T G C A T G C A T C G A T G C C T G A C T A G C T A G T G C A A G T C A T C G
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCCCCGCAGGMCG-
--GCCTCAGGGCAT
 A T G C A G T C G A T C A T G C A T G C A T C G A T G C C T G A C T A G C T A G T G C A A G T C A T C G A C G T
A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T