Information for 2-GATGCACCATTCA (Motif 2)

A C T G C G T A A C G T A C T G G T A C C G T A G T A C A G T C C T G A A C G T A G C T A G T C C G T A
Reverse Opposite:
A C G T A C T G T C G A C G T A A G C T A C T G A C T G A C G T A C T G G T A C C G T A C G A T G T A C
p-value:1e-13
log p-value:-3.207e+01
Information Content per bp:1.840
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.3 +/- 27.0bp
Average Position of motif in Background32.6 +/- 9.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GATGCACCATTCA
-ATGCATAATTCA
 A C T G C G T A A C G T A C T G G T A C C G T A G T A C A G T C C T G A A C G T A G C T A G T C C G T A
A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GATGCACCATTCA---
-ATGAATWATTCATGA
 A C T G C G T A A C G T A C T G G T A C C G T A G T A C A G T C C T G A A C G T A G C T A G T C C G T A A C G T A C G T A C G T
A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

PB0137.1_Irf3_2/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GATGCACCATTCA--
-NNGCACCTTTCTCC
 A C T G C G T A A C G T A C T G G T A C C G T A G T A C A G T C C T G A A C G T A G C T A G T C C G T A A C G T A C G T
A C G T A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GATGCACCATTCA---
-ATGCATWATGCATRW
 A C T G C G T A A C G T A C T G G T A C C G T A G T A C A G T C C T G A A C G T A G C T A G T C C G T A A C G T A C G T A C G T
A C G T C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

NFYA/MA0060.2/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GATGCACCATTCA-------
--TGGACCAATCAGCACTCT
 A C T G C G T A A C G T A C T G G T A C C G T A G T A C A G T C C T G A A C G T A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GATGCACCATTCA-
AAATGGACCAATCAG
 A C G T A C T G C G T A A C G T A C T G G T A C C G T A G T A C A G T C C T G A A C G T A G C T A G T C C G T A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GATGCACCATTCA-------
------ACATTCATGACACG
 A C T G C G T A A C G T A C T G G T A C C G T A G T A C A G T C C T G A A C G T A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GATGCACCATTCA
-TTGCAACATN--
 A C T G C G T A A C G T A C T G G T A C C G T A G T A C A G T C C T G A A C G T A G C T A G T C C G T A
A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GATGCACCATTCA-
CATTAATTATTCAT
 A C T G C G T A A C G T A C T G G T A C C G T A G T A C A G T C C T G A A C G T A G C T A G T C C G T A A C G T
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GATGCACCATTCA--
---GGACCACCCACG
 A C T G C G T A A C G T A C T G G T A C C G T A G T A C A G T C C T G A A C G T A G C T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G